A B C D E F G H I J K L M N O P Q R S T U V W X Y 

A

a - Variable in class org.grobid.core.document.DocumentPiece
 
a - Variable in class org.grobid.core.utilities.Pair
 
abbrevJournalsPositions - Variable in class org.grobid.core.sax.MarecSaxParser
 
abstract_ - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
AbstractEngineFactory - Class in org.grobid.core.factory
Abstract factory to get engine instance.
AbstractEngineFactory() - Constructor for class org.grobid.core.factory.AbstractEngineFactory
 
AbstractParser - Class in org.grobid.core.engines
 
AbstractParser(GrobidModels) - Constructor for class org.grobid.core.engines.AbstractParser
 
AbstractParser(GrobidModels, CntManager) - Constructor for class org.grobid.core.engines.AbstractParser
 
accumulatedText - Variable in class org.grobid.core.sax.MarecSaxParser
 
ACRONYM - Variable in class org.grobid.core.features.FeatureFactory
 
activateObject(Object) - Method in class org.grobid.core.factory.GrobidPoolingFactory
addAcceptedLanguages(String) - Method in class org.grobid.core.engines.Engine
Add a language to the list of accepted languages.
addAffiliation(Affiliation) - Method in class org.grobid.core.data.Person
 
addAffiliationBlocks(String) - Method in class org.grobid.core.data.Person
 
addAffiliationMarker(String) - Method in class org.grobid.core.data.Person
 
addAuthor(String) - Method in class org.grobid.core.data.BiblioItem
 
addAuthor(String) - Method in class org.grobid.core.data.BiblioSet
 
addBlock(Block) - Method in class org.grobid.core.document.Document
 
addBlock(Block) - Method in class org.grobid.core.layout.Cluster
 
addBlock2(Integer) - Method in class org.grobid.core.layout.Cluster
 
addCategory(String) - Method in class org.grobid.core.data.BiblioItem
 
addCharacters(String) - Method in class org.grobid.core.utilities.XMLWriter
Add characters to the current buffer.
addChild(DocumentNode) - Method in class org.grobid.core.document.DocumentNode
 
addDepartment(String) - Method in class org.grobid.core.data.Affiliation
 
addDictionary(String, String) - Method in class org.grobid.core.lexicon.Lexicon
 
addDigit() - Method in class org.grobid.core.utilities.GornIndex
Add the number 1 as last element of index.
addEditor(String) - Method in class org.grobid.core.data.BiblioItem
 
addEditor(String) - Method in class org.grobid.core.data.BiblioSet
 
addEndElement(String) - Method in class org.grobid.core.utilities.XMLWriter
Add a end tag to the current buffer.
addFeaturesAffiliationAddress(List<String>, List<List<OffsetPosition>>) - Static method in class org.grobid.core.features.FeaturesVectorAffiliationAddress
Add the features for the affiliation+address model.
addFeaturesChemicalEntities(String, int, int, boolean, boolean) - Static method in class org.grobid.core.features.FeaturesVectorChemicalEntity
Add the features for the chemical entity extraction model.
addFeaturesCitation(List<String>, List<List<OffsetPosition>>, List<List<OffsetPosition>>, List<List<OffsetPosition>>, List<List<OffsetPosition>>) - Static method in class org.grobid.core.features.FeaturesVectorCitation
Add feature for citation parsing.
addFeaturesDate(List<String>) - Static method in class org.grobid.core.features.FeaturesVectorDate
Add feature for date parsing.
addFeaturesHeader(File, boolean) - Static method in class org.grobid.core.features.FeaturesVectorHeader
Add feature for header recognition to labeled data in a file.
addFeaturesHeader(List<String>, boolean) - Static method in class org.grobid.core.features.FeaturesVectorHeader
Add feature for header recognition.
addFeaturesName(List<String>) - Static method in class org.grobid.core.features.FeaturesVectorName
Add feature for name parsing.
addFeaturesPatentReferences(String, int, int, boolean, boolean, boolean, boolean) - Static method in class org.grobid.core.features.FeaturesVectorReference
Add the features for the patent reference extraction model.
addFirstNames(String) - Method in class org.grobid.core.lexicon.Lexicon
 
addFullAuthor(Person) - Method in class org.grobid.core.data.BiblioItem
 
addFullEditor(Person) - Method in class org.grobid.core.data.BiblioItem
 
addInstitution(String) - Method in class org.grobid.core.data.Affiliation
 
addItem(Object) - Method in class org.grobid.core.annotations.Annotation
Add an annotation to the writer with the pCurrItem given in argument.
AdditionalRegexTextSegmenter - Class in org.grobid.core.engines.citations
Date: 8/27/13
AdditionalRegexTextSegmenter() - Constructor for class org.grobid.core.engines.citations.AdditionalRegexTextSegmenter
 
addKeyword(String) - Method in class org.grobid.core.data.BiblioItem
 
addLaboratory(String) - Method in class org.grobid.core.data.Affiliation
 
addLastNames(String) - Method in class org.grobid.core.lexicon.Lexicon
 
addLayoutToken(LayoutToken) - Method in class org.grobid.core.layout.LayoutTokenization
 
addListItems() - Method in class org.grobid.core.annotations.Annotation
Add the items (patents and articles).
addMarker(String) - Method in class org.grobid.core.data.Person
 
addMeeting(String) - Method in class org.grobid.core.data.BiblioSet
 
addMetric(String, CntsMetric) - Method in interface org.grobid.core.utilities.counters.CntManager
 
addOffset(int) - Method in class org.grobid.core.data.BibDataSet
 
addOffset(Integer) - Method in class org.grobid.core.data.BibDataSet
 
addPublisher(String) - Method in class org.grobid.core.data.BiblioSet
 
addRaw(String) - Method in class org.grobid.core.utilities.XMLWriter
Add any kind of data to the buffer (even XML).
address - Variable in class org.grobid.core.document.DocumentNode
 
addSourceBib(String) - Method in class org.grobid.core.data.BibDataSet
 
addStartElement(StartElement) - Method in class org.grobid.core.utilities.XMLWriter
 
addStartElement(StartElement, QName, String) - Method in class org.grobid.core.utilities.XMLWriter
 
addStartElement(String) - Method in class org.grobid.core.utilities.XMLWriter
Add a start tag to the current buffer.
addStartElement(String, Iterator<Attribute>) - Method in class org.grobid.core.utilities.XMLWriter
Add a start tag to the current buffer.
addStartElement(String, Map<String, String>) - Method in class org.grobid.core.utilities.XMLWriter
Add a start tag to the current buffer.
addStartElement(String, String...) - Method in class org.grobid.core.utilities.XMLWriter
Add a start tag to the current buffer.
addSubject(String) - Method in class org.grobid.core.data.BiblioItem
 
addToken(LayoutToken) - Method in class org.grobid.core.layout.Block
 
addToken(String) - Method in class org.grobid.core.layout.LayoutTokenization
 
addTokenizedDocument() - Method in class org.grobid.core.document.Document
Parser PDF2XML output representation and get the tokenized form of the document.
Affiliation - Class in org.grobid.core.data
Class for representing and exchanging affiliation information.
Affiliation() - Constructor for class org.grobid.core.data.Affiliation
 
Affiliation(Affiliation) - Constructor for class org.grobid.core.data.Affiliation
 
affiliationAddressBlock - Variable in class org.grobid.core.data.BiblioItem
 
AffiliationAddressParser - Class in org.grobid.core.engines
 
AffiliationAddressParser() - Constructor for class org.grobid.core.engines.AffiliationAddressParser
 
alignmentStatus - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
alignmentStatus - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
analyzer - Variable in class org.grobid.core.engines.AbstractParser
 
analyzer - Variable in class org.grobid.core.engines.AuthorParser
 
AND - Static variable in class org.grobid.core.utilities.TextUtilities
 
Annotation - Class in org.grobid.core.annotations
That object takes a list of PatentItem and/or BibDataSet and generate the annotation in tei format to insert inside the xml.
Annotation(List<PatentItem>, List<BibDataSet>, Description) - Constructor for class org.grobid.core.annotations.Annotation
The constructor.
appendDescriptionContent(String) - Method in class org.grobid.core.annotations.TeiStAXParsedInfo
When inside a paragraph (See #processParagraphStartTag(String, Iterator)), this method is called to add some content to the TeiStAXParsedInfo.description.
appendN(StringBuffer, char, int) - Static method in class org.grobid.core.utilities.TextUtilities
Appending nb times the char c to the a StringBuffer...
appendOutputStream() - Method in class org.grobid.core.annotations.TeiStAXParser
Append teiBuffer to the output stream.
appendOutputStream(String) - Method in class org.grobid.core.annotations.TeiStAXParser
Append pContent to the output stream.
appendParagraphContent(String) - Method in class org.grobid.core.annotations.Description
Append the content of the paragraph to pContent.
appendParagraphEndTag() - Method in class org.grobid.core.annotations.Description
Process the end of the current parsed paragraph.
appendParagraphStartTag(StartElement) - Method in class org.grobid.core.annotations.Description
Process the start of a paragraph.
appendRawContent(String) - Method in class org.grobid.core.annotations.Description
Add some raw content to rawDescription.
appendStartDescription(StartElement, String) - Method in class org.grobid.core.annotations.Description
Process the start of the description.
apr - Static variable in class org.grobid.core.engines.DateParser
 
arabicCharacters(char) - Static method in class org.grobid.core.analyzers.ArabicChars
Method for mapping some Arabic characters to their equivalent ASCII codes.
ArabicChars - Class in org.grobid.core.analyzers
 
ArabicChars() - Constructor for class org.grobid.core.analyzers.ArabicChars
 
Article - Static variable in class org.grobid.core.data.BiblioItem
 
articles - Variable in class org.grobid.core.annotations.Annotation
List of the articles items.
assign(List<Person>, List<String>) - Method in interface org.grobid.core.data.util.AuthorEmailAssigner
 
assign(List<Person>, List<String>) - Method in class org.grobid.core.data.util.ClassicAuthorEmailAssigner
 
attachAffiliations() - Method in class org.grobid.core.data.BiblioItem
Attach existing recognized affiliations to authors
attachEmails() - Method in class org.grobid.core.data.BiblioItem
Attach existing recognized emails to authors
ATTR_CERT - Static variable in interface org.grobid.core.utilities.TeiValues
 
ATTR_ID - Static variable in interface org.grobid.core.utilities.TeiValues
 
ATTR_IDENT - Static variable in interface org.grobid.core.utilities.TeiValues
 
ATTR_SUB_TYPE - Static variable in interface org.grobid.core.utilities.TeiValues
 
ATTR_TARGET - Static variable in interface org.grobid.core.utilities.TeiValues
 
ATTR_TYPE - Static variable in interface org.grobid.core.utilities.TeiValues
 
ATTR_VERSION - Static variable in interface org.grobid.core.utilities.TeiValues
 
ATTR_WHEN - Static variable in interface org.grobid.core.utilities.TeiValues
 
attributeNameToString(Attribute) - Static method in class org.grobid.core.utilities.XmlUtils
Give the String representation of an Attribute name.
aug - Static variable in class org.grobid.core.engines.DateParser
 
authorBlock - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
AuthorEmailAssigner - Interface in org.grobid.core.data.util
User: zholudev Date: 10/8/14
authorities - Static variable in class org.grobid.core.engines.patent.PatentRefParser
 
AuthorParser - Class in org.grobid.core.engines
 
AuthorParser() - Constructor for class org.grobid.core.engines.AuthorParser
 
available() - Method in class org.grobid.core.process.StreamGobbler
 
available() - Method in class org.grobid.core.process.StreamProcess
 

B

b - Variable in class org.grobid.core.document.DocumentPiece
 
b - Variable in class org.grobid.core.utilities.Pair
 
BasicStructureBuilder - Class in org.grobid.core.document
Class for building basic structures in a document item.
BasicStructureBuilder() - Constructor for class org.grobid.core.document.BasicStructureBuilder
 
batchCreateTrainingFulltext(String, String, int) - Method in class org.grobid.core.engines.Engine
Process all the PDF in a given directory with a fulltext extraction and produce the corresponding training data format files for manual correction.
batchCreateTrainingHeader(String, String, int) - Method in class org.grobid.core.engines.Engine
Process all the PDF in a given directory with a header extraction and produce the corresponding training data format files for manual correction.
batchCreateTrainingPatentcitations(String, String) - Method in class org.grobid.core.engines.Engine
Process all the XML patent documents in a given directory with a patent citation extraction and produce the corresponding training data format files for manual correction.
batchCreateTrainingReferenceSegmentation(String, String, int) - Method in class org.grobid.core.engines.Engine
Create training data for the segmentation of a reference block based on a repository of PDF files containing a reference section and the current reference segmentation model
batchCreateTrainingSegmentation(String, String, int) - Method in class org.grobid.core.engines.Engine
Process all the PDF in a given directory with a segmentation process and produce the corresponding training data format files for manual correction.
batchProcessFulltext(String, String, boolean, boolean) - Method in class org.grobid.core.engines.Engine
Extract the fulltext for all PDF files in a given directory and produce the results as an XML file TEI conformant.
batchProcessHeader(String, String, boolean) - Method in class org.grobid.core.engines.Engine
Extract the headers for all PDF files in a given directory and produce the results as an XML file TEI conformant.
BibDataSet - Class in org.grobid.core.data
Structure for representing the different information for a citation and its different context of citation.
BibDataSet() - Constructor for class org.grobid.core.data.BibDataSet
 
BiblioItem - Class in org.grobid.core.data
Class for representing and exchanging a bibliographical item.
BiblioItem() - Constructor for class org.grobid.core.data.BiblioItem
 
BiblioSet - Class in org.grobid.core.data
Class for representing authority lists for bibliographies.
BiblioSet() - Constructor for class org.grobid.core.data.BiblioSet
 
Block - Class in org.grobid.core.layout
Class for representing and exchanging a document block.
Block() - Constructor for class org.grobid.core.layout.Block
 
Block.Type - Enum in org.grobid.core.layout
 
blockStatus - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
blockStatus - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
blockStatus - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
blockStatus - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
blockStatus - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
bold - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
bold - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
bold - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
bold - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
bold - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
bold - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
Book - Static variable in class org.grobid.core.data.BiblioItem
 
bookMetadataBlock - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
BookStructureParser - Class in org.grobid.core.engines.ebook
Structure extraction of an ebook.
BookStructureParser() - Constructor for class org.grobid.core.engines.ebook.BookStructureParser
 
boundBox(BoundingBox) - Method in class org.grobid.core.layout.BoundingBox
 
BoundingBox - Class in org.grobid.core.layout
Created by zholudev on 18/08/15.
BoundingBoxCalculator - Class in org.grobid.core.utilities
Created by zholudev on 18/08/15.
BoundingBoxCalculator() - Constructor for class org.grobid.core.utilities.BoundingBoxCalculator
 
bracketReferenceSegment(String) - Static method in class org.grobid.core.document.TEIFormater
Identify in a reference string the part in bracket.
buildBiblioSet(BiblioSet, String) - Method in class org.grobid.core.data.BiblioItem
 
buildItem(String, String, double, String, String) - Method in class org.grobid.core.annotations.Annotation
Generate the item in TEI format.
buildPointer(String, int, int) - Method in class org.grobid.core.annotations.Description
Build the tag ptr with the input parameters.
byteToHex(byte[]) - Static method in class org.grobid.core.utilities.SHA1
Convert from byte to hexa.

C

calculate(List<LayoutToken>) - Static method in class org.grobid.core.utilities.BoundingBoxCalculator
 
calculateTeiIdToBibDataSets() - Method in class org.grobid.core.document.Document
 
capitalisation - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
capitalisation - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
capitalisation - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
capitalisation - Variable in class org.grobid.core.features.FeaturesVectorDate
 
capitalisation - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
capitalisation - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
capitalisation - Variable in class org.grobid.core.features.FeaturesVectorName
 
capitalisation - Variable in class org.grobid.core.features.FeaturesVectorReference
 
capitalisation - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
capitalisation - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
capitalizeFully(String, String) - Static method in class org.grobid.core.utilities.TextUtilities
This is a re-implementation of the capitalizeFully of Apache commons lang, because it appears not working properly.
CERTAINTY_HIGH_LABEL - Static variable in interface org.grobid.core.utilities.TeiValues
 
CERTAINTY_LOW_LABEL - Static variable in interface org.grobid.core.utilities.TeiValues
 
CERTAINTY_MEDIUM_LABEL - Static variable in interface org.grobid.core.utilities.TeiValues
 
CERTAINTY_VERY_HIGH_LABEL - Static variable in interface org.grobid.core.utilities.TeiValues
 
CERTAINTY_VERY_LOW_LABEL - Static variable in interface org.grobid.core.utilities.TeiValues
 
characters(char[], int, int) - Method in class org.grobid.core.sax.CountryCodeSaxParser
 
characters(char[], int, int) - Method in class org.grobid.core.sax.CrossrefSaxParser
 
characters(char[], int, int) - Method in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
characters(char[], int, int) - Method in class org.grobid.core.sax.MarecSaxParser
 
characters(char[], int, int) - Method in class org.grobid.core.sax.PatentAnnotationSaxParser
 
characters(char[], int, int) - Method in class org.grobid.core.sax.PDF2XMLSaxParser
 
characters(char[], int, int) - Method in class org.grobid.core.sax.TextSaxParser
 
checkIfDescription(StartElement) - Method in class org.grobid.core.annotations.TeiStAXParsedInfo
Checks if the tag pTagName with attributes pAttributtes is a description.
checkProperties() - Static method in class org.grobid.core.utilities.GrobidProperties
Checks if the given properties contains non-empty and non-null values for the properties of list Grobid properties
ChemicalEntity - Class in org.grobid.core.data
Class for managing chemical entities.
ChemicalEntity() - Constructor for class org.grobid.core.data.ChemicalEntity
 
ChemicalEntity(String) - Constructor for class org.grobid.core.data.ChemicalEntity
 
ChemicalParser - Class in org.grobid.core.engines.entities
Chemical entities extraction.
ChemicalParser() - Constructor for class org.grobid.core.engines.entities.ChemicalParser
 
children - Variable in class org.grobid.core.document.DocumentNode
 
CitationParser - Class in org.grobid.core.engines
 
CitationParser(EngineParsers, CntManager) - Constructor for class org.grobid.core.engines.CitationParser
 
CitationParser(EngineParsers) - Constructor for class org.grobid.core.engines.CitationParser
 
CitationParserCounters - Enum in org.grobid.core.engines.counters
User: zholudev Date: 2/25/14
citations - Variable in class org.grobid.core.sax.MarecSaxParser
 
ClassicAuthorEmailAssigner - Class in org.grobid.core.data.util
User: zholudev Date: 10/8/14
ClassicAuthorEmailAssigner() - Constructor for class org.grobid.core.data.util.ClassicAuthorEmailAssigner
 
Classification - Class in org.grobid.core.data
Class for representing a classification.
Classification() - Constructor for class org.grobid.core.data.Classification
 
clean() - Method in class org.grobid.core.data.Affiliation
 
clean(String) - Static method in class org.grobid.core.utilities.TextUtilities
Map special ligature and characters coming from the pdf
cleanAbstract(String) - Method in class org.grobid.core.data.BiblioItem
 
cleanBody(String) - Static method in class org.grobid.core.utilities.Utilities
Cleaninig of the body of text prior to term extraction.
cleanField(String, boolean) - Static method in class org.grobid.core.utilities.TextUtilities
Remove useless punctuation at the end and begining of a metadata field.
cleanISBNString(String) - Static method in class org.grobid.core.data.BiblioItem
Special string cleaining of ISBN and ISSN numbers.
cleanKeywords(String) - Static method in class org.grobid.core.data.BiblioItem
Some little cleaning of the keyword field.
cleanPage(String) - Static method in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
cleanSQLString(String) - Static method in class org.grobid.core.data.BiblioItem
General string cleaining for SQL strings.
cleanTitles(BiblioItem) - Static method in class org.grobid.core.data.BiblioItem
 
cleanZFNMetadata(BiblioItem) - Static method in class org.grobid.core.utilities.Utilities
Special cleaning for ZFN extracted data in a BiblioItem
clone() - Method in class org.grobid.core.annotations.Paragraph
clone() - Method in class org.grobid.core.document.DocumentNode
 
clone() - Method in class org.grobid.core.utilities.GornIndex
close(boolean) - Method in class org.grobid.core.document.DocumentSource
 
close(DocumentSource, boolean) - Static method in class org.grobid.core.document.DocumentSource
 
close() - Method in class org.grobid.core.engines.AbstractParser
 
close() - Method in class org.grobid.core.engines.AuthorParser
 
close() - Method in class org.grobid.core.engines.CitationParser
 
close() - Method in class org.grobid.core.engines.Engine
 
close() - Method in class org.grobid.core.engines.EngineParsers
 
close() - Method in class org.grobid.core.engines.FullTextParser
 
close() - Method in class org.grobid.core.engines.HeaderParser
 
close() - Method in class org.grobid.core.engines.patent.ReferenceExtractor
 
close() - Method in class org.grobid.core.engines.ProcessEngine
Close engine resources.
close() - Method in class org.grobid.core.engines.Segmentation
 
close() - Method in class org.grobid.core.engines.tagging.CRFPPTagger
 
close() - Method in class org.grobid.core.engines.tagging.WapitiTagger
 
close() - Method in class org.grobid.core.jni.WapitiModel
 
close() - Method in class org.grobid.core.process.StreamGobbler
 
close() - Method in class org.grobid.core.process.StreamProcess
 
closeDb() - Method in class org.grobid.core.utilities.Consolidation
Close database connection
Cluster - Class in org.grobid.core.layout
Class for representing cluster of document layout elements, typically all blocks having the same font parameters.
Cluster() - Constructor for class org.grobid.core.layout.Cluster
 
cnt(Enum<?>) - Method in interface org.grobid.core.utilities.counters.CntManager
 
cnt(String, String) - Method in interface org.grobid.core.utilities.counters.CntManager
 
cnt() - Method in interface org.grobid.core.utilities.counters.Counter
 
cntManager - Variable in class org.grobid.core.engines.AbstractParser
 
CntManager - Interface in org.grobid.core.utilities.counters
 
CntManagerFactory - Class in org.grobid.core.utilities.counters.impl
 
CntManagerFactory() - Constructor for class org.grobid.core.utilities.counters.impl.CntManagerFactory
 
CntManagerGrepRepresentation - Class in org.grobid.core.utilities.counters.impl
Date: 7/3/12 Time: 10:32 AM
CntManagerGrepRepresentation() - Constructor for class org.grobid.core.utilities.counters.impl.CntManagerGrepRepresentation
 
CntManagerRepresentation - Interface in org.grobid.core.utilities.counters
Date: 7/3/12 Time: 10:30 AM
CntManagerSaver - Interface in org.grobid.core.utilities.counters
Date: 6/29/12 Time: 2:41 PM
CntManagerSaverImpl - Class in org.grobid.core.utilities.counters.impl
Date: 6/29/12 Time: 2:44 PM
CntManagerSaverImpl() - Constructor for class org.grobid.core.utilities.counters.impl.CntManagerSaverImpl
 
CntsMetric - Interface in org.grobid.core.utilities.counters
Date: 6/29/12 Time: 4:47 PM
COLON - Static variable in class org.grobid.core.utilities.TextUtilities
 
COMMA - Static variable in class org.grobid.core.utilities.TextUtilities
 
commonName - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
commonName - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
commonName - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
commonName - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
commonName - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
commonName - Variable in class org.grobid.core.features.FeaturesVectorName
 
commonName - Variable in class org.grobid.core.features.FeaturesVectorReference
 
commonName - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
commonName - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
compareTo(Date) - Method in class org.grobid.core.data.Date
The lowest date always win.
compareTo(Object) - Method in class org.grobid.core.data.Date
 
compareTo(PatentItem) - Method in class org.grobid.core.data.PatentItem
 
compareTo(DocumentPiece) - Method in class org.grobid.core.document.DocumentPiece
 
compareTo(DocumentPointer) - Method in class org.grobid.core.document.DocumentPointer
 
conferencePaperBlock - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
conferencesPositions - Variable in class org.grobid.core.sax.MarecSaxParser
 
confidenceRateToString(double) - Static method in class org.grobid.core.annotations.Annotation
Convert the confidence rate to String sentence.
confPrefixes - Static variable in class org.grobid.core.data.BiblioItem
 
consolidate - Variable in class org.grobid.core.annotations.TeiStAXParser
Indicate if the citation should be consolidated with an external call to bibliographical databases
consolidate(BiblioItem, List<BiblioItem>) - Method in class org.grobid.core.utilities.Consolidation
Try to consolidate some uncertain bibliographical data with crossref web service based on core metadata
consolidateCitation(BiblioItem) - Method in class org.grobid.core.engines.CitationParser
Consolidate an existing list of recognized citations based on access to external internet bibliographic databases.
consolidateCrossrefGetByAuthorTitle(String, String, BiblioItem, List<BiblioItem>) - Method in class org.grobid.core.utilities.Consolidation
Try to consolidate some uncertain bibliographical data with crossref web service based on title and first author.
consolidateCrossrefGetByDOI(BiblioItem, List<BiblioItem>) - Method in class org.grobid.core.utilities.Consolidation
Try to consolidate some uncertain bibliographical data with crossref web service based on the DOI if it is around
consolidateCrossrefGetByJournalVolumeFirstPage(String, String, String, String, BiblioItem, List<BiblioItem>) - Method in class org.grobid.core.utilities.Consolidation
Try to consolidate some uncertain bibliographical data with crossref web service based on the following core information: journal title, volume and first page.
consolidateHeader(BiblioItem) - Method in class org.grobid.core.engines.HeaderParser
Consolidate an existing list of recognized citations based on access to external internet bibliographic databases.
Consolidation - Class in org.grobid.core.utilities
Class for managing the extraction of bibliographical informations from pdf documents.
Consolidation() - Constructor for class org.grobid.core.utilities.Consolidation
 
containDash - Variable in class org.grobid.core.features.FeaturesVectorDate
 
containDash - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
containDash - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
containPunct - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
containPunct - Variable in class org.grobid.core.features.FeaturesVectorDate
 
containPunct - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
containPunct - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
contentItemBlock - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
context - Static variable in class org.grobid.core.utilities.GrobidProperties
The context of the application.
convertStreamToString(InputStream) - Static method in class org.grobid.core.utilities.TextUtilities
 
correct(BiblioItem, BiblioItem) - Static method in class org.grobid.core.data.BiblioItem
Correct fields of the first biblio item based on the second one and he reference string.
countDigit(String) - Static method in class org.grobid.core.utilities.TextUtilities
Count the number of digit in a given string.
Counter - Interface in org.grobid.core.utilities.counters
 
country - Variable in class org.grobid.core.sax.TextSaxParser
 
COUNTRY_CODES - Static variable in class org.grobid.core.features.FeatureFactory
 
CountryCodeSaxParser - Class in org.grobid.core.sax
SAX parser for the XML description of country codes in ISO 3166.
CountryCodeSaxParser() - Constructor for class org.grobid.core.sax.CountryCodeSaxParser
 
CountryCodeSaxParser(Map, Set) - Constructor for class org.grobid.core.sax.CountryCodeSaxParser
 
countryName - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
createEngine() - Method in class org.grobid.core.factory.AbstractEngineFactory
Return a new instance of engine.
createEngine() - Method in class org.grobid.core.factory.GrobidFactory
Return a new instance of engine.
createEngine() - Method in class org.grobid.core.factory.GrobidFactoryFullInit
Return a new instance of engine.
createTrainingCitationPatent(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Generate training data for citation extraction from patent documents.
createTrainingData(Document, int) - Method in class org.grobid.core.engines.ReferenceSegmenterParser
 
createTrainingFullText(String, String, String, int) - Method in class org.grobid.core.engines.Engine
Create training data for the full text model based on the application of the current full text model on a new PDF
createTrainingFullText(String, String, String, int) - Method in class org.grobid.core.engines.FullTextParser
Process the full text of the specified pdf and format the result as training data.
createTrainingFulltext(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Generate training data for the full text model.
createTrainingFullTextEbook(String, String, String, int) - Method in class org.grobid.core.engines.ebook.BookStructureParser
Process the full text of the specified ebook pdf and format the result as training data.
createTrainingHeader(String, String, String, int) - Method in class org.grobid.core.engines.Engine
Create training data for the header model based on the application of the current header model on a new PDF
createTrainingHeader(String, String, String) - Method in class org.grobid.core.engines.HeaderParser
Process the header of the specified pdf and format the result as training data.
createTrainingHeader(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Generate training data for the header model.
createTrainingPatentCitations(String, String) - Method in class org.grobid.core.engines.Engine
Process an XML patent document with a patent citation extraction and produce the corresponding training data format files for manual correction.
createTrainingReferenceSegmentation(String, String, int) - Method in class org.grobid.core.engines.Engine
Create training data for the segmentation of a reference block based on a PDF file containing a reference section and the current reference segmentation model
createTrainingReferenceSegmentation(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Generate training data for the reference segmentation model.
createTrainingSegmentation(String, String, String, int) - Method in class org.grobid.core.engines.Engine
Create training data for the segmenation model based on the application of the current segmentation model on a new PDF
createTrainingSegmentation(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Generate training data for the segmentation model.
createTrainingSegmentation(String, String, String, int) - Method in class org.grobid.core.engines.Segmentation
Process the content of the specified pdf and format the result as training data.
CRFPP_NATIVE_LIB_NAME - Static variable in class org.grobid.core.main.GrobidConstants
 
CRFPPTagger - Class in org.grobid.core.engines.tagging
User: zholudev Date: 3/20/14
CRFPPTagger(GrobidModels) - Constructor for class org.grobid.core.engines.tagging.CRFPPTagger
 
CrossrefSaxParser - Class in org.grobid.core.sax
SAX parser for XML crossref DOI metadata descriptions.
CrossrefSaxParser() - Constructor for class org.grobid.core.sax.CrossrefSaxParser
 
CrossrefSaxParser(BiblioItem) - Constructor for class org.grobid.core.sax.CrossrefSaxParser
 
CrossrefUnixrefSaxParser - Class in org.grobid.core.sax
SAX parser for XML crossref DOI metadata descriptions.
CrossrefUnixrefSaxParser() - Constructor for class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
CrossrefUnixrefSaxParser(BiblioItem) - Constructor for class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
CrossrefUnixrefSaxParser(List<BiblioItem>) - Constructor for class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
currentPatentNumber - Variable in class org.grobid.core.engines.patent.ReferenceExtractor
 
currentPatentNumber - Variable in class org.grobid.core.sax.TextSaxParser
 
currParagraph - Variable in class org.grobid.core.annotations.Description
The,current parsed paragraph.
currTEIParsedInfo - Variable in class org.grobid.core.annotations.TeiStAXParser
The current TEIParsedInfo.
CybozuLanguageDetector - Class in org.grobid.core.lang.impl
User: zholudev Date: 10/7/14
CybozuLanguageDetector() - Constructor for class org.grobid.core.lang.impl.CybozuLanguageDetector
 
CybozuLanguageDetectorFactory - Class in org.grobid.core.lang.impl
User: zholudev Date: 11/24/11 Time: 11:10 AM
CybozuLanguageDetectorFactory() - Constructor for class org.grobid.core.lang.impl.CybozuLanguageDetectorFactory
 

D

Date - Class in org.grobid.core.data
Class for representing a date.
Date() - Constructor for class org.grobid.core.data.Date
 
DateParser - Class in org.grobid.core.engines
 
DateParser() - Constructor for class org.grobid.core.engines.DateParser
 
dateToString(Date, String) - Static method in class org.grobid.core.utilities.Utilities
Format a date in string using pFormat.
DE - Static variable in class org.grobid.core.lang.Language
 
debug - Variable in class org.grobid.core.engines.patent.ReferenceExtractor
 
dec - Static variable in class org.grobid.core.engines.DateParser
 
decrementGornIndex() - Method in class org.grobid.core.annotations.TeiStAXParsedInfo
Decrement the gorn index.
decrementIndex() - Method in class org.grobid.core.utilities.GornIndex
Decrement the index.
DEGREE_OF_CONFIDENCE - Static variable in interface org.grobid.core.utilities.TeiValues
 
dehyphenize(String) - Static method in class org.grobid.core.utilities.TextUtilities
Text extracted from a PDF is usually hyphenized, which is not desirable.
dehyphenizeHard(String) - Static method in class org.grobid.core.utilities.TextUtilities
Text extracted from a PDF is usually hyphenized, which is not desirable.
deleteDir(File) - Static method in class org.grobid.core.utilities.Utilities
Deletes all files and subdirectories under dir.
delimiters - Static variable in class org.grobid.core.analyzers.GrobidDefaultAnalyzer
 
delimiters - Static variable in class org.grobid.core.utilities.TextUtilities
 
depict(ChemicalEntity, String) - Static method in class org.grobid.core.engines.entities.NameToStructureResolver
 
description - Variable in class org.grobid.core.annotations.Annotation
The description.
Description - Class in org.grobid.core.annotations
Contains the information about the current parsed description.
Description(boolean) - Constructor for class org.grobid.core.annotations.Description
Constructor.
description - Variable in class org.grobid.core.annotations.TeiStAXParsedInfo
Content of the description.
descriptionPointer - Variable in class org.grobid.core.annotations.Paragraph
The description pointer.
descriptionRetrieval(String) - Method in class org.grobid.core.document.OPSService
Access to full text for a given patent publication number
descriptionTag - Variable in class org.grobid.core.annotations.Description
The StartElement of the description tag (
deserialize(InputStream) - Method in interface org.grobid.core.utilities.counters.CntManagerSaver
 
deserialize(InputStream) - Method in class org.grobid.core.utilities.counters.impl.CntManagerSaverImpl
 
destroyInitialContext() - Static method in class org.grobid.core.mock.MockContext
Remove the initial context.
destroyObject(Object) - Method in class org.grobid.core.factory.GrobidPoolingFactory
detect(String) - Method in class org.grobid.core.lang.impl.CybozuLanguageDetector
 
detect(String) - Method in interface org.grobid.core.lang.LanguageDetector
Detects a language id that must consist of two letter together with a confidence coefficient.
df - Static variable in class org.grobid.core.utilities.counters.impl.CntManagerGrepRepresentation
 
df - Static variable in class org.grobid.core.utilities.counters.impl.CntManagerSaverImpl
 
digit - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
digit - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
digit - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
digit - Variable in class org.grobid.core.features.FeaturesVectorDate
 
digit - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
digit - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
digit - Variable in class org.grobid.core.features.FeaturesVectorName
 
digit - Variable in class org.grobid.core.features.FeaturesVectorReference
 
digit - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
digit - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
Digital_support - Static variable in class org.grobid.core.data.BiblioItem
 
Document - Class in org.grobid.core.document
Class for representing, processing and exchanging a document item.
Document(DocumentSource) - Constructor for class org.grobid.core.document.Document
 
DocumentNode - Class in org.grobid.core.document
Class corresponding to a node of the structure of a hierarchically organized document (i.e.
DocumentNode() - Constructor for class org.grobid.core.document.DocumentNode
 
DocumentNode(String, String) - Constructor for class org.grobid.core.document.DocumentNode
 
DocumentPiece - Class in org.grobid.core.document
User: zholudev Date: 4/1/14
DocumentPiece(DocumentPointer, DocumentPointer) - Constructor for class org.grobid.core.document.DocumentPiece
 
DocumentPointer - Class in org.grobid.core.document
User: zholudev Date: 4/1/14 Class representing a pointer within a PDF document, basically a block index and then a token index within a block (not global token index)
DocumentPointer(int, int, int) - Constructor for class org.grobid.core.document.DocumentPointer
 
DocumentPointer(Document, int, int) - Constructor for class org.grobid.core.document.DocumentPointer
 
DocumentSource - Class in org.grobid.core.document
User: zholudev Date: 3/6/15
DOIPattern - Static variable in class org.grobid.core.document.Document
Get all section titles
DOUBLE_QUOTE - Static variable in class org.grobid.core.utilities.TextUtilities
 
downloadPDF(String, String, String) - Method in class org.grobid.core.engines.Engine
Download a PDF file.

E

editorBlock - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
EMAIL - Variable in class org.grobid.core.features.FeatureFactory
 
email - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
email - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
email - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
email - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
email - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
EMAIL2 - Variable in class org.grobid.core.features.FeatureFactory
 
EmailSanitizer - Class in org.grobid.core.data.util
User: zholudev Date: 10/8/14
EmailSanitizer() - Constructor for class org.grobid.core.data.util.EmailSanitizer
 
EN - Static variable in class org.grobid.core.lang.Language
 
end - Variable in class org.grobid.core.utilities.OffsetPosition
 
END_BRACKET - Static variable in class org.grobid.core.utilities.TextUtilities
 
endElement(String, String, String) - Method in class org.grobid.core.sax.CountryCodeSaxParser
 
endElement(String, String, String) - Method in class org.grobid.core.sax.CrossrefSaxParser
 
endElement(String, String, String) - Method in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
endElement(String, String, String) - Method in class org.grobid.core.sax.MarecSaxParser
 
endElement(String, String, String) - Method in class org.grobid.core.sax.PatentAnnotationSaxParser
 
endElement(String, String, String) - Method in class org.grobid.core.sax.PDF2XMLSaxParser
 
endElement(String, String, String) - Method in class org.grobid.core.sax.TextSaxParser
 
endTag(String) - Static method in class org.grobid.core.utilities.XmlUtils
Build a end tag.
endToken - Variable in class org.grobid.core.document.DocumentNode
 
Engine - Class in org.grobid.core.engines
Class for managing the extraction of bibliographical informations from PDF documents or raw text.
Engine() - Constructor for class org.grobid.core.engines.Engine
Constructor for the Grobid engine instance.
EngineParsers - Class in org.grobid.core.engines
 
EngineParsers() - Constructor for class org.grobid.core.engines.EngineParsers
 
equals(Object) - Method in class org.grobid.core.annotations.Paragraph
Used in Description to get the paragraph corresponding to the pointer.
equals(Object) - Method in class org.grobid.core.document.DocumentPointer
 
equals(Object) - Method in class org.grobid.core.utilities.Pair
 
EQUALS - Static variable in class org.grobid.core.utilities.XmlUtils
 
equation - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
ESC_AND - Static variable in class org.grobid.core.utilities.TextUtilities
 
ESC_DOUBLE_QUOTE - Static variable in class org.grobid.core.utilities.TextUtilities
 
ESC_GREATER_THAN - Static variable in class org.grobid.core.utilities.TextUtilities
 
ESC_LESS_THAN - Static variable in class org.grobid.core.utilities.TextUtilities
 
eventMetadataBlock - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
eventsMatch(XMLEvent, XMLEvent) - Static method in class org.grobid.core.utilities.XmlUtils
Compares two XMLEvent instances.
extendFirstDepartment(String) - Method in class org.grobid.core.data.Affiliation
 
extendFirstInstitution(String) - Method in class org.grobid.core.data.Affiliation
 
extendFirstLaboratory(String) - Method in class org.grobid.core.data.Affiliation
 
extendLastDepartment(String) - Method in class org.grobid.core.data.Affiliation
 
extendLastInstitution(String) - Method in class org.grobid.core.data.Affiliation
 
extendLastLaboratory(String) - Method in class org.grobid.core.data.Affiliation
 
extract(Document) - Method in interface org.grobid.core.engines.citations.ReferenceSegmenter
 
extract(Document) - Method in class org.grobid.core.engines.citations.RegexReferenceSegmenter
 
extract(Document) - Method in class org.grobid.core.engines.ReferenceSegmenterParser
 
extract(Document, boolean) - Method in class org.grobid.core.engines.ReferenceSegmenterParser
 
extractAllReferencesOPS(boolean, boolean, List<PatentItem>, List<BibDataSet>) - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Extract all reference from the full text retrieve via OPS.
extractAllReferencesPDFFile(String, boolean, boolean, List<PatentItem>, List<BibDataSet>) - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Extract all reference from the PDF file of a patent publication.
extractAllReferencesString(String, boolean, boolean, List<PatentItem>, List<BibDataSet>) - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Extract all reference from a simple piece of text.
extractAllReferencesXMLFile(String, boolean, boolean, List<PatentItem>, List<BibDataSet>) - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Extract all reference from an XML file in ST.36 or MAREC format.
extractChemicalEntities(String) - Method in class org.grobid.core.engines.Engine
Extract chemical names from text.
extractChemicalEntities(String) - Method in class org.grobid.core.engines.entities.ChemicalParser
Extract all reference from a simple piece of text.
extractCitationSegments(String) - Method in class org.grobid.core.engines.citations.AdditionalRegexTextSegmenter
 
extractor - Variable in class org.grobid.core.annotations.TeiStAXParser
The class reference extractor.
extractPatentReferencesXMLFile(String, boolean, boolean, List<PatentItem>) - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Extract all reference from a patent in XML ST.36 like.

F

FamilyMembers - Static variable in class org.grobid.core.document.PatentDocument
 
FastMatcher - Class in org.grobid.core.lexicon
Class for fast matching of word sequences over text stream.
FastMatcher(File) - Constructor for class org.grobid.core.lexicon.FastMatcher
 
father - Variable in class org.grobid.core.document.DocumentNode
 
FeatureFactory - Class in org.grobid.core.features
Class providing a toolkit for managing and creating features or string sequence tagging problems.
FeaturesVectorAffiliationAddress - Class in org.grobid.core.features
Class for features used for parsing a block corresponding to affiliation and address.
FeaturesVectorAffiliationAddress() - Constructor for class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
FeaturesVectorChemicalEntity - Class in org.grobid.core.features
Class for features used for chemical entity identification in raw texts such as scientific articles and patent descriptions.
FeaturesVectorChemicalEntity() - Constructor for class org.grobid.core.features.FeaturesVectorChemicalEntity
 
FeaturesVectorCitation - Class in org.grobid.core.features
Class for features used for header parsing.
FeaturesVectorCitation() - Constructor for class org.grobid.core.features.FeaturesVectorCitation
 
FeaturesVectorDate - Class in org.grobid.core.features
Class for features used for parsing date chunk.
FeaturesVectorDate() - Constructor for class org.grobid.core.features.FeaturesVectorDate
 
FeaturesVectorFulltext - Class in org.grobid.core.features
Class for features used for fulltext parsing.
FeaturesVectorFulltext() - Constructor for class org.grobid.core.features.FeaturesVectorFulltext
 
FeaturesVectorHeader - Class in org.grobid.core.features
Class for features used for header parsing.
FeaturesVectorHeader() - Constructor for class org.grobid.core.features.FeaturesVectorHeader
 
FeaturesVectorName - Class in org.grobid.core.features
Class for features used for parsing sequence of names.
FeaturesVectorName() - Constructor for class org.grobid.core.features.FeaturesVectorName
 
FeaturesVectorReference - Class in org.grobid.core.features
Class for features used for reference identification in raw texts such as patent descriptions.
FeaturesVectorReference() - Constructor for class org.grobid.core.features.FeaturesVectorReference
 
FeaturesVectorReferenceSegmenter - Class in org.grobid.core.features
Class for features used for header parsing.
FeaturesVectorReferenceSegmenter() - Constructor for class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
FeaturesVectorSegmentation - Class in org.grobid.core.features
Class for features used for high level segmentation of document.
FeaturesVectorSegmentation() - Constructor for class org.grobid.core.features.FeaturesVectorSegmentation
 
feb - Static variable in class org.grobid.core.engines.DateParser
 
feedTaggerAndParse(Tagger, Iterable<String>) - Static method in class org.grobid.core.engines.tagging.CRFPPTagger
 
figure - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
Figure - Static variable in class org.grobid.core.document.NonTextObject
 
FILE_ENDING_TEI_FULLTEXT - Static variable in class org.grobid.core.utilities.GrobidProperties
 
FILE_ENDING_TEI_HEADER - Static variable in class org.grobid.core.utilities.GrobidProperties
 
FILE_NAME_MODEL - Static variable in class org.grobid.core.utilities.GrobidProperties
 
filterLine(String) - Static method in class org.grobid.core.utilities.TextUtilities
 
filterLineNumber(Document) - Method in class org.grobid.core.document.BasicStructureBuilder
Filter out line numbering possibly present in the document.
firstAuthor - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
firstName - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
firstName - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
firstName - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
firstName - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
firstName - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
firstName - Variable in class org.grobid.core.features.FeaturesVectorName
 
firstName - Variable in class org.grobid.core.features.FeaturesVectorReference
 
firstName - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
firstName - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
firstPageBlock - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
firstPass(Document) - Static method in class org.grobid.core.document.BasicStructureBuilder
First pass to detect basic structures: remove page header/footer, identify section numbering, identify Figure and table blocks.
firstToken - Variable in class org.grobid.core.layout.Block
 
flattenAllCounters(String) - Method in interface org.grobid.core.utilities.counters.CntManager
 
flush() - Method in class org.grobid.core.utilities.XMLWriter
Flush data.
FOLDER_NAME_MODELS - Static variable in class org.grobid.core.utilities.GrobidProperties
 
fontSize - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
fontSize - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
fontSize - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
fontSize - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
fontSize - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
fontSize - Variable in class org.grobid.core.layout.Block
 
fontSize - Variable in class org.grobid.core.layout.LayoutToken
 
fontStatus - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
fontStatus - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
fontStatus - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
fontStatus - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
fontStatus - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
formatFourDecimals(double) - Static method in class org.grobid.core.utilities.TextUtilities
 
formatTime(Long) - Static method in class org.grobid.core.utilities.counters.GrobidTimer
Format a time from Long to String using the following format: GrobidTimer.MIN_SEC_MILI.
formatTwoDecimals(double) - Static method in class org.grobid.core.utilities.TextUtilities
 
formatXML(String) - Static method in class org.grobid.core.utilities.XMLWriter
Return the pToFormat formatted.
FR - Static variable in class org.grobid.core.lang.Language
 
fromLayoutToken(LayoutToken) - Static method in class org.grobid.core.layout.BoundingBox
 
fromPdf(File) - Static method in class org.grobid.core.document.DocumentSource
 
fromPdf(File, int, int) - Static method in class org.grobid.core.document.DocumentSource
 
fromPdf(File, int, int, boolean) - Static method in class org.grobid.core.document.DocumentSource
 
fromPdfWithImages(File, int, int) - Static method in class org.grobid.core.document.DocumentSource
 
fromPointAndDimensions(int, double, double, double, double) - Static method in class org.grobid.core.layout.BoundingBox
 
fromTwoPoints(int, double, double, double, double) - Static method in class org.grobid.core.layout.BoundingBox
 
fullInit() - Static method in class org.grobid.core.factory.AbstractEngineFactory
Initializes all necessary things for starting grobid.
fullPunctuations - Static variable in class org.grobid.core.utilities.TextUtilities
 
fullTag(String, String) - Static method in class org.grobid.core.utilities.XmlUtils
Build a full tag.
FullTextParser - Class in org.grobid.core.engines
 
FullTextParser(EngineParsers) - Constructor for class org.grobid.core.engines.FullTextParser
TODO some documentation...
fullTextToTEI(String, boolean, boolean) - Method in class org.grobid.core.engines.Engine
Parse and convert the current article into TEI, this method performs the whole parsing and conversion process.
fullTextToTEI(String, boolean, boolean, String) - Method in class org.grobid.core.engines.Engine
Parse and convert the current article into TEI, this method performs the whole parsing and conversion process.
fullTextToTEI(String, boolean, boolean, String, int, int, boolean) - Method in class org.grobid.core.engines.Engine
Parse and convert the current article into TEI, this method performs the whole parsing and conversion process.

G

gbdFullTimer - Variable in class org.grobid.core.annotations.TeiStAXParser
Timers.
gbdNoExtractTimer - Variable in class org.grobid.core.annotations.TeiStAXParser
Timers.
generalResultSegmentation(Document, String, List<String>) - Static method in class org.grobid.core.document.BasicStructureBuilder
 
generateEmailVariants(String, String) - Static method in class org.grobid.core.utilities.TextUtilities
 
generateTrainingData(String, String) - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Annotate a new XML patent document based on training data format with the current model.
generateXMLReport(File, ArrayList<PatentItem>, ArrayList<BibDataSet>) - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Write the list of extracted references in an XML file
GenericTagger - Interface in org.grobid.core.engines.tagging
User: zholudev Date: 3/20/14
GenericTaggerUtils - Class in org.grobid.core.engines.tagging
User: zholudev Date: 4/2/14
GenericTaggerUtils() - Constructor for class org.grobid.core.engines.tagging.GenericTaggerUtils
 
get(String) - Static method in enum org.grobid.core.engines.tagging.GrobidCRFEngine
 
get_GROBID_HOME_PATH() - Static method in class org.grobid.core.utilities.GrobidProperties
Return the GROBID_HOME path.
getA() - Method in class org.grobid.core.utilities.Pair
 
getA_Day() - Method in class org.grobid.core.data.BiblioItem
 
getA_Month() - Method in class org.grobid.core.data.BiblioItem
 
getA_Year() - Method in class org.grobid.core.data.BiblioItem
 
getAbstract() - Method in class org.grobid.core.data.BiblioItem
 
getAbstract(Document) - Method in class org.grobid.core.engines.Engine
Print the abstract content.
getAbstractHeader() - Method in class org.grobid.core.data.BiblioItem
 
getAcceptedLanguages() - Method in class org.grobid.core.engines.Engine
Give the list of languages for which an extraction is allowed.
getAcronym() - Method in class org.grobid.core.data.Affiliation
 
getAddress() - Method in class org.grobid.core.data.BiblioItem
 
getAddressString() - Method in class org.grobid.core.data.Affiliation
 
getAddrLine() - Method in class org.grobid.core.data.Affiliation
 
getAffiliation() - Method in class org.grobid.core.data.BiblioItem
 
getAffiliationAddressParser() - Method in class org.grobid.core.engines.EngineParsers
 
getAffiliationBlocks() - Method in class org.grobid.core.data.Person
 
getAffiliationMarkers() - Method in class org.grobid.core.data.Person
 
getAffiliations() - Method in class org.grobid.core.data.Person
 
getAffiliationString() - Method in class org.grobid.core.data.Affiliation
 
getAlignment() - Method in class org.grobid.core.utilities.LevenshteinDistanceAligment
retrieves the Levenshtein distance alignment
getAllBlocksClean(int, int) - Method in class org.grobid.core.document.Document
Return all blocks without markers.
getAllCounters() - Method in interface org.grobid.core.utilities.counters.CntManager
 
getAllLinesFeatured(Document) - Static method in class org.grobid.core.engines.Segmentation
Addition of the features at line level for the complete document.
getAllSavedTimes() - Method in class org.grobid.core.utilities.counters.GrobidTimer
Return the complete Map of all stored times.
getApplication() - Method in class org.grobid.core.data.PatentItem
 
getArticleTitle() - Method in class org.grobid.core.data.BiblioItem
 
getAuthority() - Method in class org.grobid.core.data.PatentItem
 
getAuthorParser() - Method in class org.grobid.core.engines.EngineParsers
 
getAuthors() - Method in class org.grobid.core.data.BiblioItem
 
getAuthors() - Method in class org.grobid.core.data.BiblioSet
 
getAuthorString() - Method in class org.grobid.core.data.BiblioItem
 
getB() - Method in class org.grobid.core.utilities.Pair
 
getBeginBlockPAReport() - Method in class org.grobid.core.document.PatentDocument
 
getBeginPage() - Method in class org.grobid.core.data.BiblioItem
 
getBibDataSetByTeiId(String) - Method in class org.grobid.core.document.Document
 
getBibDataSets() - Method in class org.grobid.core.document.Document
 
getBlockDocumentHeaders() - Method in class org.grobid.core.document.Document
 
getBlockNumber() - Method in class org.grobid.core.document.NonTextObject
 
getBlockPtr() - Method in class org.grobid.core.document.DocumentPointer
 
getBlocks() - Method in class org.grobid.core.document.Document
 
getBlocks() - Method in class org.grobid.core.layout.Cluster
 
getBlocks2() - Method in class org.grobid.core.layout.Cluster
 
getBody() - Method in class org.grobid.core.document.Document
Return the text content of the body of the document.
getBodyTextFeatured(Document, SortedSet<DocumentPiece>) - Static method in class org.grobid.core.engines.FullTextParser
 
getBold() - Method in class org.grobid.core.layout.Block
 
getBold() - Method in class org.grobid.core.layout.Cluster
 
getBold() - Method in class org.grobid.core.layout.LayoutToken
 
getBookTitle() - Method in class org.grobid.core.data.BiblioItem
 
getBookType() - Method in class org.grobid.core.data.BiblioItem
 
getCategories() - Method in class org.grobid.core.data.BiblioItem
 
getCategory() - Method in class org.grobid.core.data.PriorArtCitation
 
getChemicalParser() - Method in class org.grobid.core.engines.EngineParsers
 
getCitationParser() - Method in class org.grobid.core.engines.EngineParsers
 
getClasses() - Method in class org.grobid.core.data.Classification
 
getClassificationScheme() - Method in class org.grobid.core.data.Classification
 
getClusters() - Method in class org.grobid.core.document.Document
 
getCntManager() - Static method in class org.grobid.core.engines.Engine
 
getCntManager() - Static method in class org.grobid.core.utilities.counters.impl.CntManagerFactory
 
getColBegin() - Method in class org.grobid.core.data.Passage
 
getColEnd() - Method in class org.grobid.core.data.Passage
 
getColorFont() - Method in class org.grobid.core.layout.Block
 
getColorFont() - Method in class org.grobid.core.layout.LayoutToken
 
getComment() - Method in class org.grobid.core.data.PriorArtCitation
 
getConf() - Method in class org.grobid.core.data.PatentItem
 
getConfidence() - Method in class org.grobid.core.data.BibDataSet
 
getConfidence() - Method in class org.grobid.core.data.BiblioItem
 
getConfidence() - Method in class org.grobid.core.data.PatentItem
 
getConfidence() - Method in class org.grobid.core.lang.Language
 
getConfidenceRateFromItem(Object) - Static method in class org.grobid.core.annotations.Annotation
Get the confidence rate of the item.
getContext() - Method in class org.grobid.core.data.PatentItem
Context of occurrence of the reference
getContext() - Static method in class org.grobid.core.utilities.GrobidProperties
Return the context.
getCopyright() - Method in class org.grobid.core.data.BiblioItem
 
getCorpusPath(File, GrobidModels) - Static method in class org.grobid.core.utilities.GrobidProperties
 
getCorresp() - Method in class org.grobid.core.data.Person
 
getCounter(Enum<?>) - Method in interface org.grobid.core.utilities.counters.CntManager
 
getCounter(String, String) - Method in interface org.grobid.core.utilities.counters.CntManager
 
getCounters(Class<? extends Enum<?>>) - Method in interface org.grobid.core.utilities.counters.CntManager
 
getCounters(String) - Method in interface org.grobid.core.utilities.counters.CntManager
 
getCountry() - Method in class org.grobid.core.data.Affiliation
 
getCountry() - Method in class org.grobid.core.data.BiblioItem
 
getcountryCode(String) - Method in class org.grobid.core.lexicon.Lexicon
 
getCrossrefHost() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the host for a connection to crossref, given in the grobid-property file.
getCrossrefId() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the id for a connection to crossref, given in the grobid-property file.
getCrossrefPort() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the port for a connection to crossref, given in the grobid-property file.
getCrossrefPw() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the password for a connection to crossref, given in the grobid-property file.
getCurrentGornIndex() - Method in class org.grobid.core.annotations.TeiStAXParsedInfo
 
getCurrentGornIndex() - Method in class org.grobid.core.utilities.GornIndex
Return the current value of the Gorn index.
getDateParser() - Method in class org.grobid.core.engines.EngineParsers
 
getDay() - Method in class org.grobid.core.data.BiblioItem
 
getDay() - Method in class org.grobid.core.data.Date
 
getDayString() - Method in class org.grobid.core.data.Date
 
getDedication() - Method in class org.grobid.core.data.BiblioItem
 
getDegree() - Method in class org.grobid.core.data.BiblioItem
 
getDepartments() - Method in class org.grobid.core.data.Affiliation
 
getDescription() - Method in class org.grobid.core.annotations.TeiStAXParsedInfo
 
getDescription() - Method in class org.grobid.core.document.NonTextObject
 
getDesign() - Method in class org.grobid.core.data.PatentItem
 
getDistance() - Method in class org.grobid.core.utilities.LevenshteinDistanceAligment
retrieves the Levenshtein distance
getDocOPS(String) - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Get a patent description by its number and OPS
getDocumentPart(SegmentationLabel) - Method in class org.grobid.core.document.Document
 
getDocumentPartText(SegmentationLabel) - Method in class org.grobid.core.document.Document
 
getDocumentPieceText(DocumentPiece) - Method in class org.grobid.core.document.Document
 
getDocumentPieceText(SortedSet<DocumentPiece>) - Method in class org.grobid.core.document.Document
 
getDocumentPieceTokenization(DocumentPiece) - Method in class org.grobid.core.document.Document
 
getDOI() - Method in class org.grobid.core.data.BiblioItem
 
getDOIMatches() - Method in class org.grobid.core.document.Document
 
getE_Day() - Method in class org.grobid.core.data.BiblioItem
 
getE_Month() - Method in class org.grobid.core.data.BiblioItem
 
getE_Year() - Method in class org.grobid.core.data.BiblioItem
 
getEdition() - Method in class org.grobid.core.data.BiblioItem
 
getEditors() - Method in class org.grobid.core.data.BiblioItem
 
getEditors() - Method in class org.grobid.core.data.BiblioSet
 
getElapsedTime(String, String) - Method in class org.grobid.core.utilities.counters.GrobidTimer
Compute the time elapsed between pTagStart and pTagStop.
getElapsedTimeFormated(String, String) - Method in class org.grobid.core.utilities.counters.GrobidTimer
Compute the time elapsed between pTagStart and pTagStop.
getElapsedTimeFromStart(String) - Method in class org.grobid.core.utilities.counters.GrobidTimer
Compute the time elapsed between the start of the timer and the stop time.
getElapsedTimeFromStartFormated(String) - Method in class org.grobid.core.utilities.counters.GrobidTimer
Compute the time elapsed between the start of the timer and the stop time.
Return the time formatted: GrobidTimer.MIN_SEC_MILI.
getEmail() - Method in class org.grobid.core.data.BiblioItem
 
getEmail() - Method in class org.grobid.core.data.Person
 
getEndPage() - Method in class org.grobid.core.data.BiblioItem
 
getEndPosition() - Method in class org.grobid.core.document.NonTextObject
 
getEndToken() - Method in class org.grobid.core.layout.Block
 
getEngine() - Method in class org.grobid.core.engines.ProcessEngine
 
getEngine() - Method in class org.grobid.core.factory.AbstractEngineFactory
Return a new instance of engine if it doesn't exist, the existing instance else.
getEngine() - Method in class org.grobid.core.factory.GrobidFactory
Return a new instance of engine if it doesn't exist, the existing instance else.
getEngine() - Method in class org.grobid.core.factory.GrobidFactoryFullInit
Return a new instance of engine if it doesn't exist, the existing instance else.
getEngineFromPool() - Static method in class org.grobid.core.factory.GrobidPoolingFactory
Obtains an instance from this pool.
By contract, clients must call GrobidPoolingFactory.returnEngine(org.grobid.core.engines.Engine) when they finish to use the engine.
getEnglishTitle() - Method in class org.grobid.core.data.BiblioItem
 
getEpolineURL() - Method in class org.grobid.core.data.PatentItem
 
getError() - Method in class org.grobid.core.data.BiblioItem
 
getErrorStreamContents() - Method in class org.grobid.core.process.ProcessRunner
 
getEspacenetURL() - Method in class org.grobid.core.data.PatentItem
 
getEvalCorpusPath(File, GrobidModels) - Static method in class org.grobid.core.utilities.GrobidProperties
 
getEvent() - Method in class org.grobid.core.data.BiblioItem
 
getExitStatus() - Method in class org.grobid.core.process.ProcessRunner
 
getExt() - Method in enum org.grobid.core.engines.tagging.GrobidCRFEngine
 
getFailAffiliation() - Method in class org.grobid.core.data.Affiliation
 
getFeatures() - Method in class org.grobid.core.engines.citations.LabeledReferenceResult
 
getFigure() - Method in class org.grobid.core.data.Passage
 
getFile() - Method in class org.grobid.core.document.NonTextObject
 
getFirstAuthorSurname() - Method in class org.grobid.core.data.BiblioItem
Return the surname of the first author.
getFirstName() - Method in class org.grobid.core.data.Person
 
getFolderName() - Method in enum org.grobid.core.GrobidModels
 
getFont() - Method in class org.grobid.core.layout.Block
 
getFont() - Method in class org.grobid.core.layout.Cluster
 
getFont() - Method in class org.grobid.core.layout.LayoutToken
 
getFontSize() - Method in class org.grobid.core.layout.Block
 
getFontSize() - Method in class org.grobid.core.layout.Cluster
 
getFontSize() - Method in class org.grobid.core.layout.LayoutToken
 
getFullAffiliations() - Method in class org.grobid.core.data.BiblioItem
 
getFullAuthors() - Method in class org.grobid.core.data.BiblioItem
 
getFullEditors() - Method in class org.grobid.core.data.BiblioItem
 
getFulltextFeatured(Document) - Method in class org.grobid.core.engines.ebook.BookStructureParser
 
getFullTextParser() - Method in class org.grobid.core.engines.EngineParsers
 
getGornIdx() - Method in class org.grobid.core.annotations.Paragraph
 
getGrant() - Method in class org.grobid.core.data.BiblioItem
 
getGrobidCRFEngine() - Static method in class org.grobid.core.utilities.GrobidProperties
 
getGrobidHomePath() - Static method in class org.grobid.core.utilities.GrobidProperties
 
getGrobidPropertiesPath() - Static method in class org.grobid.core.utilities.GrobidProperties
Return the GROBID_HOME path.
getHeader() - Method in class org.grobid.core.document.Document
heuristics to get the header section...
getHeader() - Method in class org.grobid.core.document.NonTextObject
 
getHeaderAnnotation(boolean) - Method in class org.grobid.core.annotations.Annotation
Generate thre header from the patents, articles and description got in the constructor.
getHeaderByIntroduction() - Method in class org.grobid.core.document.Document
We try to match the introduction section in a safe way, and consider if minimum requirements are met the blocks before this position as header.
getHeaderFeatured(boolean, boolean) - Method in class org.grobid.core.document.Document
Add features in the header section -> should be moved to the header parser class!
getHeaderLastHope() - Method in class org.grobid.core.document.Document
We return the first page as header estimation...
getHeaderParser() - Method in class org.grobid.core.engines.EngineParsers
 
getHeight() - Method in class org.grobid.core.layout.Block
 
getHeight() - Method in class org.grobid.core.layout.BoundingBox
 
getHeight() - Method in class org.grobid.core.layout.LayoutToken
 
getHelp() - Static method in class org.grobid.core.main.batch.GrobidMain
 
getId() - Method in class org.grobid.core.annotations.Paragraph
 
getIdFromAttributes() - Method in class org.grobid.core.annotations.Paragraph
Get the id value of the paragraph.
getInchi() - Method in class org.grobid.core.data.ChemicalEntity
 
getInDOI() - Method in class org.grobid.core.data.BiblioItem
 
getInput() - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
getInstance() - Static method in class org.grobid.core.analyzers.GrobidAnalyzer
 
getInstance() - Static method in class org.grobid.core.factory.GrobidFactory
Return a new instance of GrobidFactory if it doesn't exist, the existing instance else.
getInstance() - Static method in class org.grobid.core.factory.GrobidFactoryFullInit
Return a new instance of GrobidFactory if it doesn't exist, the existing instance else.
getInstance() - Static method in class org.grobid.core.features.FeatureFactory
 
getInstance() - Method in class org.grobid.core.lang.impl.CybozuLanguageDetectorFactory
 
getInstance() - Method in interface org.grobid.core.lang.LanguageDetectorFactory
 
getInstance() - Static method in class org.grobid.core.lexicon.Lexicon
 
getInstance() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns a static GrobidProperties object.
getInstance() - Static method in class org.grobid.core.utilities.LanguageUtilities
 
getInstitution() - Method in class org.grobid.core.data.BiblioItem
 
getInstitutions() - Method in class org.grobid.core.data.Affiliation
 
getISBN10() - Method in class org.grobid.core.data.BiblioItem
 
getISBN13() - Method in class org.grobid.core.data.BiblioItem
 
getISSN() - Method in class org.grobid.core.data.BiblioItem
 
getISSNe() - Method in class org.grobid.core.data.BiblioItem
 
getIssue() - Method in class org.grobid.core.data.BiblioItem
 
getItalic() - Method in class org.grobid.core.layout.Block
 
getItalic() - Method in class org.grobid.core.layout.Cluster
 
getItalic() - Method in class org.grobid.core.layout.LayoutToken
 
getItem() - Method in class org.grobid.core.data.BiblioItem
 
getJournal() - Method in class org.grobid.core.data.BiblioItem
 
getJournalAbbrev() - Method in class org.grobid.core.data.BiblioItem
 
getKey() - Static method in class org.grobid.core.utilities.KeyGen
Generate a Password object with a random password.
getKeyword() - Method in class org.grobid.core.data.BiblioItem
 
getKeyword() - Method in class org.grobid.core.data.Keyword
 
getKeywords() - Method in class org.grobid.core.data.BiblioItem
 
getKindCode() - Method in class org.grobid.core.data.PatentItem
 
getLabel() - Method in class org.grobid.core.engines.citations.LabeledReferenceResult
 
getLabel() - Method in enum org.grobid.core.engines.SegmentationLabel
 
getLabeledBlocks() - Method in class org.grobid.core.document.Document
 
getLaboratories() - Method in class org.grobid.core.data.Affiliation
 
getLangId() - Method in class org.grobid.core.lang.Language
 
getLanguage() - Method in class org.grobid.core.data.BiblioItem
 
getLanguage() - Method in class org.grobid.core.document.Document
 
getLanguageDetectionResourcePath() - Static method in class org.grobid.core.utilities.GrobidProperties
 
getLanguageDetectorFactory() - Static method in class org.grobid.core.utilities.GrobidProperties
 
getLargeImageURL() - Method in class org.grobid.core.data.BiblioItem
 
getLastName() - Method in class org.grobid.core.data.Person
 
getLayoutTokens() - Method in class org.grobid.core.layout.LayoutTokenization
 
getLevenshteinDistance(String, String) - Static method in class org.grobid.core.utilities.TextUtilities
Levenstein distance between two strings
getLexiconPath() - Static method in class org.grobid.core.utilities.GrobidProperties
 
getLineBegin() - Method in class org.grobid.core.data.Passage
 
getLineEnd() - Method in class org.grobid.core.data.Passage
 
getLocation() - Method in class org.grobid.core.data.BiblioItem
 
getLocationPublisher() - Method in class org.grobid.core.data.BiblioItem
 
getLocations() - Method in class org.grobid.core.data.BiblioSet
 
getMarker() - Method in class org.grobid.core.data.Affiliation
 
getMarkers() - Method in class org.grobid.core.data.Person
 
getMaxPoolConnections() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the maximum parallel connections allowed in the pool.
getMeetings() - Method in class org.grobid.core.data.BiblioSet
 
getMethod(Object, Class[], String) - Static method in class org.grobid.core.utilities.Utilities
Get the method given in string in input corresponding to the given arguments.
getMetricString(CntManager) - Method in interface org.grobid.core.utilities.counters.CntsMetric
 
getMiddleName() - Method in class org.grobid.core.data.Person
 
getModel(GrobidModels) - Static method in class org.grobid.core.engines.ModelMap
 
getModel(String) - Static method in class org.grobid.core.engines.ModelMap
Return the model corresponding to the given path.
getModel(File) - Static method in class org.grobid.core.jni.WapitiWrapper
 
getModel(File, boolean) - Static method in class org.grobid.core.jni.WapitiWrapper
 
getModelName() - Method in enum org.grobid.core.GrobidModels
 
getModelPath() - Method in enum org.grobid.core.GrobidModels
 
getModelPath(GrobidModels) - Static method in class org.grobid.core.utilities.GrobidProperties
 
getMonth() - Method in class org.grobid.core.data.BiblioItem
 
getMonth() - Method in class org.grobid.core.data.Date
 
getMonthString() - Method in class org.grobid.core.data.Date
 
getMySQLDBName() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the id for a connection to mysql, given in the grobid-property file.
getMySQLHost() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the host for a connection to mysql, given in the grobid-property file.
getMySQLPort() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the port for a connection to mysql, given in the grobid-property file.
getMySQLPw() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the password for a connection to mysql, given in the grobid-property file.
getMySQLUsername() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the id for a connection to mysql, given in the grobid-property file.
getName() - Method in class org.grobid.core.data.Affiliation
 
getNativeLibraryPath() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the content of property GrobidPropertyKeys.PROP_NATIVE_LIB_PATH as File object.
getNbBlocks() - Method in class org.grobid.core.layout.Cluster
 
getNbNPLRef() - Method in class org.grobid.core.sax.MarecSaxParser
 
getNbPages() - Method in class org.grobid.core.data.BiblioItem
 
getNbPatentRef() - Method in class org.grobid.core.sax.MarecSaxParser
 
getNBThreads() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the number of threads, given in the grobid-property file.
getNbTokens() - Method in class org.grobid.core.layout.Block
 
getNbTokens(String, int, List<String>) - Static method in class org.grobid.core.utilities.TextUtilities
Return the number of token in a line given an existing global tokenization and a current start position of the line in this global tokenization.
getNewInstance() - Static method in class org.grobid.core.utilities.GrobidProperties
Creates a new GrobidProperties object, initializes it and returns it.
getNewInstance() - Static method in class org.grobid.core.utilities.LanguageUtilities
Return a new instance.
getNewModel(String) - Static method in class org.grobid.core.engines.ModelMap
Set models with a new model.
getNewTagger() - Method in class org.grobid.core.engines.tagging.CRFPPTagger
 
getNoOpCntManager() - Static method in class org.grobid.core.utilities.counters.impl.CntManagerFactory
 
getNormalizedPublicationDate() - Method in class org.grobid.core.data.BiblioItem
 
getNormalizedSubmissionDate() - Method in class org.grobid.core.data.BiblioItem
 
getNote() - Method in class org.grobid.core.data.BiblioItem
 
getNPL() - Method in class org.grobid.core.data.PriorArtCitation
 
getNumber() - Method in class org.grobid.core.data.BiblioItem
 
getNumberEpoDoc() - Method in class org.grobid.core.data.PatentItem
 
getNumberWysiwyg() - Method in class org.grobid.core.data.PatentItem
 
getOffsetBegin() - Method in class org.grobid.core.data.PatentItem
 
getOffsetEnd() - Method in class org.grobid.core.data.ChemicalEntity
 
getOffsetEnd() - Method in class org.grobid.core.data.PatentItem
 
getOffsetRaw() - Method in class org.grobid.core.data.PatentItem
 
getOffsets() - Method in class org.grobid.core.data.BibDataSet
 
getOffsetStart() - Method in class org.grobid.core.data.ChemicalEntity
 
getOriginalAbstract() - Method in class org.grobid.core.data.BiblioItem
 
getOriginalAddress() - Method in class org.grobid.core.data.BiblioItem
 
getOriginalAffiliation() - Method in class org.grobid.core.data.BiblioItem
 
getOriginalAuthors() - Method in class org.grobid.core.data.BiblioItem
 
getOriginalJournal() - Method in class org.grobid.core.data.BiblioItem
 
getOriginalKeyword() - Method in class org.grobid.core.data.BiblioItem
 
getOriginalNote() - Method in class org.grobid.core.data.BiblioItem
 
getOriginalTitle() - Method in class org.grobid.core.data.BiblioItem
 
getOriginalVolumeBlock() - Method in class org.grobid.core.data.BiblioItem
 
getOsNameAndArch() - Static method in class org.grobid.core.utilities.Utilities
Return the name of directory to use given the os and the architecture.
Possibles returned values should match one of the following:
win-32
lin-32
lin-64
mac-64
getPage() - Method in class org.grobid.core.document.NonTextObject
 
getPage() - Method in class org.grobid.core.layout.Block
 
getPage() - Method in class org.grobid.core.layout.BoundingBox
 
getPage() - Method in class org.grobid.core.layout.LayoutToken
 
getPageBegin() - Method in class org.grobid.core.data.Passage
 
getPageEnd() - Method in class org.grobid.core.data.Passage
 
getPageRange() - Method in class org.grobid.core.data.BiblioItem
 
getParagraphFromPointer(int) - Method in class org.grobid.core.annotations.Description
Return the paragraph on which pPointer is pointing.
getParentItem() - Method in class org.grobid.core.data.BiblioItem
 
getParsers() - Method in class org.grobid.core.engines.Engine
 
getPassages() - Method in class org.grobid.core.data.PriorArtCitation
 
getPatent() - Method in class org.grobid.core.data.PriorArtCitation
 
getPath2GbdProperties(String) - Static method in class org.grobid.core.main.batch.GrobidMain
Build the path to grobid.properties from the path to grobid-home.
getPath2grobidHome() - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
getPath2grobidProperty() - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
getPath2Input() - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
getPath2Output() - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
getPdf2XMLMemoryLimitMb() - Static method in class org.grobid.core.utilities.GrobidProperties
 
getPdf2XMLPath() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the path to the home folder of pdf2xml.
getPdfFile() - Method in class org.grobid.core.document.DocumentSource
 
getPhone() - Method in class org.grobid.core.data.BiblioItem
 
getPlainLabel(String) - Static method in class org.grobid.core.engines.tagging.GenericTaggerUtils
 
getPlant() - Method in class org.grobid.core.data.PatentItem
 
getPointer(Object) - Method in class org.grobid.core.annotations.Description
Generate the tag ptr that give the position of the annotation.
getPoolMaxWait() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns maximum time to wait before timeout when the pool is full.
getPositionEnd() - Method in class org.grobid.core.annotations.Paragraph
 
getPositionStart() - Method in class org.grobid.core.annotations.Paragraph
 
getPostBox() - Method in class org.grobid.core.data.Affiliation
 
getPostCode() - Method in class org.grobid.core.data.Affiliation
 
getProcessMethodName() - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
getPropertyValue(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Return the value corresponding to the property key.
getPropertyValue(String, String) - Static method in class org.grobid.core.utilities.GrobidProperties
Return the value corresponding to the property key.
getProps() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns all grobid-properties.
getProvisional() - Method in class org.grobid.core.data.PatentItem
 
getProxyHost() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the host for a proxy connection, given in the grobid-property file.
getProxyPort() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the port for a proxy connection, given in the grobid-property file.
getPublicationDate() - Method in class org.grobid.core.data.BiblioItem
 
getPublisher() - Method in class org.grobid.core.data.BiblioItem
 
getPublisherPlace() - Method in class org.grobid.core.data.BiblioItem
 
getPublishers() - Method in class org.grobid.core.data.BiblioSet
 
getPublisherWebsite() - Method in class org.grobid.core.data.BiblioItem
 
getPubnum() - Method in class org.grobid.core.data.BiblioItem
 
getRawBib() - Method in class org.grobid.core.data.BibDataSet
 
getRawCitation() - Method in class org.grobid.core.data.PriorArtCitation
 
getRawClaims() - Method in class org.grobid.core.data.PriorArtCitation
 
getRawDate() - Method in class org.grobid.core.data.Date
 
getRawName() - Method in class org.grobid.core.data.ChemicalEntity
 
getRawPassage() - Method in class org.grobid.core.data.Passage
 
getRawString() - Method in class org.grobid.core.data.Classification
 
getReference() - Method in class org.grobid.core.data.BiblioItem
 
getReferenceExtractor() - Method in class org.grobid.core.engines.EngineParsers
 
getReferenceSegmenterParser() - Method in class org.grobid.core.engines.EngineParsers
 
getReferencesSectionFeatured(Document, SortedSet<DocumentPiece>) - Static method in class org.grobid.core.engines.ReferenceSegmenterParser
 
getReferenceText() - Method in class org.grobid.core.engines.citations.LabeledReferenceResult
 
getRefSymbol() - Method in class org.grobid.core.data.BibDataSet
 
getRefText() - Method in class org.grobid.core.sax.MarecSaxParser
 
getRegion() - Method in class org.grobid.core.data.Affiliation
 
getReissued() - Method in class org.grobid.core.data.PatentItem
 
getRepresentation(CntManager) - Method in interface org.grobid.core.utilities.counters.CntManagerRepresentation
 
getRepresentation(CntManager) - Method in class org.grobid.core.utilities.counters.impl.CntManagerGrepRepresentation
 
getResBib() - Method in class org.grobid.core.data.BibDataSet
 
getResHeader() - Method in class org.grobid.core.document.Document
 
getReview() - Method in class org.grobid.core.data.BiblioItem
 
getRotation() - Method in class org.grobid.core.layout.LayoutToken
 
getS_Day() - Method in class org.grobid.core.data.BiblioItem
 
getS_Month() - Method in class org.grobid.core.data.BiblioItem
 
getS_Year() - Method in class org.grobid.core.data.BiblioItem
 
getSegmentationParser() - Method in class org.grobid.core.engines.EngineParsers
 
getSerie() - Method in class org.grobid.core.data.BiblioItem
 
getSerieTitle() - Method in class org.grobid.core.data.BiblioItem
 
getSettlement() - Method in class org.grobid.core.data.Affiliation
 
getSHA1(String) - Static method in class org.grobid.core.utilities.SHA1
Return the hash value of argument using SHA1 algorithm.
getSmallImageURL() - Method in class org.grobid.core.data.BiblioItem
 
getSmiles() - Method in class org.grobid.core.data.ChemicalEntity
 
getSourceBib() - Method in class org.grobid.core.data.BibDataSet
 
getSpanningNode(int) - Method in class org.grobid.core.document.DocumentNode
 
getStartPosition() - Method in class org.grobid.core.document.NonTextObject
 
getStartTag() - Method in class org.grobid.core.annotations.Paragraph
 
getStartToken() - Method in class org.grobid.core.layout.Block
 
getStatus() - Method in exception org.grobid.core.exceptions.GrobidException
 
getSubjects() - Method in class org.grobid.core.data.BiblioItem
 
getSubmission() - Method in class org.grobid.core.data.BiblioItem
 
getSubmissionDate() - Method in class org.grobid.core.data.BiblioItem
 
getSubtitle() - Method in class org.grobid.core.data.BiblioItem
 
getSuffix() - Method in class org.grobid.core.data.Person
 
getSupportType() - Method in class org.grobid.core.data.BiblioItem
 
getTable() - Method in class org.grobid.core.data.Passage
 
getTagger(GrobidModels) - Static method in class org.grobid.core.engines.ModelMap
Deprecated.
getTagger(GrobidModels) - Static method in class org.grobid.core.engines.tagging.TaggerFactory
 
getTaggerResult(Iterable<String>, String) - Method in class org.grobid.core.engines.tagging.CRFPPTagger
 
getTei() - Method in class org.grobid.core.document.Document
 
getTeiFromItem(Object) - Static method in class org.grobid.core.annotations.Annotation
Get the biblStruct generated tag.
getTeiId() - Method in class org.grobid.core.data.BiblioItem
 
getTemplateName() - Method in enum org.grobid.core.GrobidModels
 
getTemplatePath(File, GrobidModels) - Static method in class org.grobid.core.utilities.GrobidProperties
 
getTempPath() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the temprorary path of grobid
getText() - Method in class org.grobid.core.layout.Block
 
getText() - Method in class org.grobid.core.layout.LayoutToken
 
getText() - Method in class org.grobid.core.sax.CountryCodeSaxParser
 
getText() - Method in class org.grobid.core.sax.CrossrefSaxParser
 
getText() - Method in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
getText() - Method in class org.grobid.core.sax.MarecSaxParser
 
getText() - Method in class org.grobid.core.sax.PatentAnnotationSaxParser
 
getText() - Method in class org.grobid.core.sax.PDF2XMLSaxParser
 
getText() - Method in class org.grobid.core.sax.TextSaxParser
 
getTime(String) - Method in class org.grobid.core.utilities.counters.GrobidTimer
Get all the time saved in the timer.
getTimeFormated(String) - Method in class org.grobid.core.utilities.counters.GrobidTimer
Get all the time saved in the timer.
getTitle() - Method in class org.grobid.core.data.BiblioItem
 
getTitle() - Method in class org.grobid.core.data.Person
 
getTokenBlockPos() - Method in class org.grobid.core.document.DocumentPointer
 
getTokenDocPos() - Method in class org.grobid.core.document.DocumentPointer
 
getTokenization() - Method in class org.grobid.core.layout.LayoutTokenization
 
getTokenization() - Method in class org.grobid.core.sax.PDF2XMLSaxParser
 
getTokenizations() - Method in class org.grobid.core.document.Document
 
getTokenizationsFulltext() - Method in class org.grobid.core.document.Document
 
getTokenizationsHeader() - Method in class org.grobid.core.document.Document
 
getTokenizationsReferences() - Method in class org.grobid.core.document.Document
 
getTokens() - Method in class org.grobid.core.layout.Block
 
getTokensAndLabels(String) - Static method in class org.grobid.core.engines.tagging.GenericTaggerUtils
 
getTop() - Method in class org.grobid.core.document.Document
 
getTown() - Method in class org.grobid.core.data.BiblioItem
 
getType() - Method in class org.grobid.core.data.BiblioItem
 
getType() - Method in class org.grobid.core.data.Keyword
 
getType() - Method in class org.grobid.core.data.PatentItem
 
getType() - Method in class org.grobid.core.document.NonTextObject
 
getType() - Method in class org.grobid.core.layout.Block
 
getTypeDescription() - Method in class org.grobid.core.data.BiblioItem
 
getURI() - Method in class org.grobid.core.data.BiblioItem
 
getURL() - Method in class org.grobid.core.data.Affiliation
 
getURL() - Method in class org.grobid.core.data.BiblioItem
 
getUsableMethods() - Static method in class org.grobid.core.engines.ProcessEngine
List the engine methods that can be called.
getUtility() - Method in class org.grobid.core.data.PatentItem
 
getVersion() - Method in class org.grobid.core.data.BiblioItem
 
getVersion() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the current version of GROBID, given in the grobid-property file, and set by maven.
getVolume() - Method in class org.grobid.core.data.BiblioItem
 
getVolumeBlock() - Method in class org.grobid.core.data.BiblioItem
 
getWeb() - Method in class org.grobid.core.data.BiblioItem
 
getWidth() - Method in class org.grobid.core.layout.Block
 
getWidth() - Method in class org.grobid.core.layout.BoundingBox
 
getWidth() - Method in class org.grobid.core.layout.LayoutToken
 
getWOPriorArtBlocks() - Method in class org.grobid.core.document.PatentDocument
Return all blocks corresponding to the prior art report of a WO patent publication
getX() - Method in class org.grobid.core.layout.Block
 
getX() - Method in class org.grobid.core.layout.BoundingBox
 
getX() - Method in class org.grobid.core.layout.LayoutToken
 
getX1() - Method in class org.grobid.core.document.NonTextObject
 
getX2() - Method in class org.grobid.core.document.NonTextObject
 
getX2() - Method in class org.grobid.core.layout.BoundingBox
 
getXmlFile() - Method in class org.grobid.core.document.DocumentSource
 
getY() - Method in class org.grobid.core.layout.Block
 
getY() - Method in class org.grobid.core.layout.BoundingBox
 
getY() - Method in class org.grobid.core.layout.LayoutToken
 
getY1() - Method in class org.grobid.core.document.NonTextObject
 
getY2() - Method in class org.grobid.core.document.NonTextObject
 
getY2() - Method in class org.grobid.core.layout.BoundingBox
 
getYear() - Method in class org.grobid.core.data.BiblioItem
 
getYear() - Method in class org.grobid.core.data.Date
 
getYearString() - Method in class org.grobid.core.data.Date
 
goodChar - Static variable in class org.grobid.core.utilities.KeyGen
Set of characters that is valid.
gorn - Variable in class org.grobid.core.annotations.TeiStAXParsedInfo
Gorn index of the document.
gornIdx - Variable in class org.grobid.core.annotations.Paragraph
The gorn index.
gornIdxStart - Variable in class org.grobid.core.annotations.Description
The gorn index.
GornIndex - Class in org.grobid.core.utilities
Index to compute a gorn index while parsing a xml document.
GornIndex() - Constructor for class org.grobid.core.utilities.GornIndex
Constructor of the Gorn index.
GornIndex(int, List<Integer>) - Constructor for class org.grobid.core.utilities.GornIndex
Constructor of the Gorn index.
GraphicBitmap - Static variable in class org.grobid.core.document.NonTextObject
 
GraphicVectoriel - Static variable in class org.grobid.core.document.NonTextObject
 
GREATER_THAN - Static variable in class org.grobid.core.utilities.TextUtilities
 
GROBID - Static variable in interface org.grobid.core.utilities.TeiValues
 
GROBID_HOME_PATH - Static variable in class org.grobid.core.mock.MockContext
 
GROBID_HOME_PATH - Static variable in class org.grobid.core.utilities.GrobidProperties
Determines the path of grobid-home for all objects of this class.
GROBID_LABEL - Static variable in interface org.grobid.core.utilities.TeiValues
 
GROBID_PROPERTY_PATH - Static variable in class org.grobid.core.mock.MockContext
 
GROBID_PROPERTY_PATH - Static variable in class org.grobid.core.utilities.GrobidProperties
Path to grobid.property.
GROBID_PROPERTY_SERVICE_PATH - Static variable in class org.grobid.core.mock.MockContext
 
GrobidAnalyzer - Class in org.grobid.core.analyzers
Class dispatching text to be tokenized to the adequate analyzer given a specified language.
GrobidConstants - Class in org.grobid.core.main
 
GrobidConstants() - Constructor for class org.grobid.core.main.GrobidConstants
 
GrobidCRFEngine - Enum in org.grobid.core.engines.tagging
User: zholudev Date: 3/31/14
GrobidDefaultAnalyzer - Class in org.grobid.core.analyzers
Default tokenizer adequate for all Indo-European languages.
GrobidDefaultAnalyzer() - Constructor for class org.grobid.core.analyzers.GrobidDefaultAnalyzer
 
GrobidException - Exception in org.grobid.core.exceptions
 
GrobidException() - Constructor for exception org.grobid.core.exceptions.GrobidException
 
GrobidException(GrobidExceptionStatus) - Constructor for exception org.grobid.core.exceptions.GrobidException
 
GrobidException(String) - Constructor for exception org.grobid.core.exceptions.GrobidException
 
GrobidException(String, GrobidExceptionStatus) - Constructor for exception org.grobid.core.exceptions.GrobidException
 
GrobidException(Throwable, GrobidExceptionStatus) - Constructor for exception org.grobid.core.exceptions.GrobidException
 
GrobidException(Throwable) - Constructor for exception org.grobid.core.exceptions.GrobidException
 
GrobidException(String, Throwable) - Constructor for exception org.grobid.core.exceptions.GrobidException
 
GrobidException(String, Throwable, GrobidExceptionStatus) - Constructor for exception org.grobid.core.exceptions.GrobidException
 
GrobidExceptionStatus - Enum in org.grobid.core.exceptions
User: zholudev Date: 1/19/15
GrobidFactory - Class in org.grobid.core.factory
Factory to get engine instances.
GrobidFactory() - Constructor for class org.grobid.core.factory.GrobidFactory
Constructor.
GrobidFactoryFullInit - Class in org.grobid.core.factory
Factory to get engine instances.
GrobidFactoryFullInit() - Constructor for class org.grobid.core.factory.GrobidFactoryFullInit
Constructor.
GrobidFilterDeleteSpaceBetweenSameAlphabet - Class in org.grobid.core.analyzers
 
GrobidFilterDeleteSpaceBetweenSameAlphabet(TokenStream) - Constructor for class org.grobid.core.analyzers.GrobidFilterDeleteSpaceBetweenSameAlphabet
 
GrobidMain - Class in org.grobid.core.main.batch
The entrance point for starting grobid from command line and perform batch processing
GrobidMain() - Constructor for class org.grobid.core.main.batch.GrobidMain
 
GrobidMainArgs - Class in org.grobid.core.main.batch
Class containing args of the batch GrobidMain.
GrobidMainArgs() - Constructor for class org.grobid.core.main.batch.GrobidMainArgs
 
GrobidModels - Enum in org.grobid.core
This enum class acts as a registry for all Grobid models.
GrobidPoolingFactory - Class in org.grobid.core.factory
 
GrobidPoolingFactory() - Constructor for class org.grobid.core.factory.GrobidPoolingFactory
Constructor.
GrobidProperties - Class in org.grobid.core.utilities
This class loads contains all names of grobid-properties and provide methods to load grobid-properties from a property file.
GrobidProperties() - Constructor for class org.grobid.core.utilities.GrobidProperties
Creates a new object and searches, where to find the grobid home folder.
GrobidProperties(Context) - Constructor for class org.grobid.core.utilities.GrobidProperties
 
GrobidPropertyException - Exception in org.grobid.core.exceptions
 
GrobidPropertyException() - Constructor for exception org.grobid.core.exceptions.GrobidPropertyException
 
GrobidPropertyException(String) - Constructor for exception org.grobid.core.exceptions.GrobidPropertyException
 
GrobidPropertyException(Throwable) - Constructor for exception org.grobid.core.exceptions.GrobidPropertyException
 
GrobidPropertyException(String, Throwable) - Constructor for exception org.grobid.core.exceptions.GrobidPropertyException
 
GrobidPropertyKeys - Interface in org.grobid.core.utilities
This class contains all the keys of the properties files.
GrobidResourceException - Exception in org.grobid.core.exceptions
 
GrobidResourceException() - Constructor for exception org.grobid.core.exceptions.GrobidResourceException
 
GrobidResourceException(String) - Constructor for exception org.grobid.core.exceptions.GrobidResourceException
 
GrobidResourceException(Throwable) - Constructor for exception org.grobid.core.exceptions.GrobidResourceException
 
GrobidResourceException(String, Throwable) - Constructor for exception org.grobid.core.exceptions.GrobidResourceException
 
GrobidTimer - Class in org.grobid.core.utilities.counters
GrobidTimer is a timer that can memorize multiple stop times.
Example of use: GrobidTimer timer= new GrobidTimer(); timer.start(); timer.stop("Time1"); timer.stop("Time2"); System.out.println("The elapsed time between start and Time1 is "+timer.getElapsedTimeFromStart("Time1")); System.out.println("The elapsed time between Time1 and Time2 is "+timer.getElapsedTime("Time1","Time2"));
GrobidTimer() - Constructor for class org.grobid.core.utilities.counters.GrobidTimer
Constructor.
GrobidTimer(boolean) - Constructor for class org.grobid.core.utilities.counters.GrobidTimer
Constructor.

H

hashCode() - Method in class org.grobid.core.annotations.Paragraph
hashCode() - Method in class org.grobid.core.document.DocumentPointer
 
hashCode() - Method in class org.grobid.core.utilities.Pair
 
header - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
header2BibTeX(BiblioItem) - Static method in class org.grobid.core.engines.Engine
Get the BibTeX string corresponding to the recognized header text
header2TEI(BiblioItem) - Static method in class org.grobid.core.engines.Engine
Get the TEI XML string corresponding to the recognized header text
headerAnnotation - Variable in class org.grobid.core.annotations.TeiStAXParser
Accumulates the header annotations.
headerNumbering1 - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
headerNumbering2 - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
headerNumbering3 - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
headerNumbering4 - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
HeaderParser - Class in org.grobid.core.engines
 
HeaderParser(EngineParsers) - Constructor for class org.grobid.core.engines.HeaderParser
 
height - Variable in class org.grobid.core.layout.Block
 
height - Variable in class org.grobid.core.layout.Cluster
 
height - Variable in class org.grobid.core.layout.LayoutToken
 
HTMLEncode(String) - Static method in class org.grobid.core.utilities.TextUtilities
Encode a string to be displayed in HTML

If fullHTML encode, then all unicode characters above 7 bits are converted into HTML entitites

HTMLEncode(String, boolean) - Static method in class org.grobid.core.utilities.TextUtilities
 
HTTP - Variable in class org.grobid.core.features.FeatureFactory
 
http - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
http - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
http - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
http - Variable in class org.grobid.core.features.FeaturesVectorReference
 
http - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
http - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 

I

i(Enum<?>) - Method in interface org.grobid.core.utilities.counters.CntManager
 
i(Enum<?>, long) - Method in interface org.grobid.core.utilities.counters.CntManager
 
i(String, String) - Method in interface org.grobid.core.utilities.counters.CntManager
 
i(String, String, long) - Method in interface org.grobid.core.utilities.counters.CntManager
 
i() - Method in interface org.grobid.core.utilities.counters.Counter
 
i(long) - Method in interface org.grobid.core.utilities.counters.Counter
 
id - Variable in class org.grobid.core.annotations.Paragraph
The id.
inAbbrevJournalNames(String) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in journal abbreviated name gazetteer
InBook - Static variable in class org.grobid.core.data.BiblioItem
 
inCityNames(String) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in city name gazetteer for a given string
inCityNames(List<String>) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in city name gazetteer for a given string already tokenized
InCollection - Static variable in class org.grobid.core.data.BiblioItem
 
inConferenceNames(String) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in conference/proceedings name gazetteer
increment() - Method in class org.grobid.core.utilities.GornIndex
Increment by 1 the element of index located at depth-1.
incrementGornIndex() - Method in class org.grobid.core.annotations.TeiStAXParsedInfo
Increment the gorn index.
incrementIndex() - Method in class org.grobid.core.utilities.GornIndex
Decrement the index.
incrementToken() - Method in class org.grobid.core.analyzers.GrobidFilterDeleteSpaceBetweenSameAlphabet
 
inDictionary(String) - Method in class org.grobid.core.lexicon.Lexicon
Lexical look-up, default is English
inDictionary(String, String) - Method in class org.grobid.core.lexicon.Lexicon
 
inferOutputPath(GrobidMainArgs) - Static method in class org.grobid.core.engines.ProcessEngine
Infer the output path if not given in arguments.
inferParamsNotSet() - Static method in class org.grobid.core.main.batch.GrobidMain
Infer some parameters not given in arguments.
inferPdfInputPath(GrobidMainArgs) - Static method in class org.grobid.core.engines.ProcessEngine
Infer the input path for pdfs if not given in arguments.
inFirstNames(String) - Method in class org.grobid.core.lexicon.Lexicon
Look-up in first name gazetteer
init() - Static method in class org.grobid.core.factory.AbstractEngineFactory
Initializes all necessary things for starting grobid.
init(Context) - Static method in class org.grobid.core.utilities.GrobidProperties
 
init() - Static method in class org.grobid.core.utilities.GrobidProperties
Loads all properties given in property file GrobidProperties.GROBID_HOME_PATH.
init() - Method in class org.grobid.core.utilities.XMLWriter
Init the buffer and the XML writer.
initCities() - Method in class org.grobid.core.lexicon.Lexicon
 
initConferences() - Method in class org.grobid.core.lexicon.Lexicon
 
initializePaths() - Static method in class org.grobid.core.utilities.GrobidProperties
Initialize the different paths set in the configuration file grobid.properties.
initJournals() - Method in class org.grobid.core.lexicon.Lexicon
 
initLocations() - Method in class org.grobid.core.lexicon.Lexicon
 
initModels() - Static method in class org.grobid.core.engines.ModelMap
Loading of the models.
initOrganisations() - Method in class org.grobid.core.lexicon.Lexicon
 
initOrgForms() - Method in class org.grobid.core.lexicon.Lexicon
 
initPersonTitles() - Method in class org.grobid.core.lexicon.Lexicon
 
initProcess() - Static method in class org.grobid.core.main.batch.GrobidMain
Initialize the batch.
initPublishers() - Method in class org.grobid.core.lexicon.Lexicon
 
initReader() - Method in class org.grobid.core.annotations.TeiStAXParser
Initialize the parser.
inJournalNames(String) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in journal name gazetteer
inLastNames(String) - Method in class org.grobid.core.lexicon.Lexicon
Look-up in last name gazetteer
inLocationNames(String) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in location name gazetteer for a given string
inLocationNames(List<String>) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in location name gazetteer for a given string already tokenized
inOrganisationNames(String) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in organisation name gazetteer for a given string
inOrganisationNames(List<String>) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in organisation name gazetteer for a given string already tokenized
inOrgFormNames(String) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in organisation form name gazetteer for a given string
inOrgFormNames(List<String>) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in organisation form name gazetteer for a given string already tokenized
inPersonTitleNames(String) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in person title gazetteer for a given string
inPersonTitleNames(List<String>) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in person title gazetteer for a given string already tokenized
InProceedings - Static variable in class org.grobid.core.data.BiblioItem
 
inPublisherNames(String) - Method in class org.grobid.core.lexicon.Lexicon
Soft look-up in conference/proceedings name gazetteer
inputStream - Variable in class org.grobid.core.annotations.TeiStAXParser
The input Stream to process.
introduction - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
introductionStrict - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
isAllLowerCase(String) - Static method in class org.grobid.core.utilities.TextUtilities
 
isAllUpperCase(String) - Static method in class org.grobid.core.utilities.TextUtilities
 
isAmbiguous() - Method in class org.grobid.core.data.Date
 
isAnnotated - Variable in class org.grobid.core.annotations.Paragraph
If the paragraph is annotated.
isAnnotated() - Method in class org.grobid.core.annotations.Paragraph
 
isAttrTypeDescription(StartElement) - Static method in class org.grobid.core.annotations.TeiStAXParsedInfo
Check if the StartElement has an attribute of the type type="description".
isBeginningOfEntity(String) - Static method in class org.grobid.core.engines.tagging.GenericTaggerUtils
 
isContextExecutionServer() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns if the execution context is stand alone or server.
isCountry(String) - Method in class org.grobid.core.lexicon.Lexicon
 
isCountryCode - Variable in class org.grobid.core.features.FeaturesVectorReference
 
isDebug - Static variable in class org.grobid.core.annotations.TeiStAXParser
If the logger is in debug mode.
isDigit - Variable in class org.grobid.core.features.FeatureFactory
 
isEmpty() - Method in class org.grobid.core.utilities.XMLWriter
 
isIndented - Variable in class org.grobid.core.annotations.Description
If the description output will be indented.
isIndented - Variable in class org.grobid.core.annotations.TeiStAXParser
If the output has to be indented.
isKindCode - Variable in class org.grobid.core.features.FeaturesVectorReference
 
isKnownAbbrevJournalTitle - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
isKnownAbbrevJournalTitle - Variable in class org.grobid.core.features.FeaturesVectorReference
 
isKnownChemicalNameToken - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
isKnownChemicalToken - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
isKnownConferenceTitle - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
isKnownConferenceTitle - Variable in class org.grobid.core.features.FeaturesVectorReference
 
isKnownJournalTitle - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
isKnownJournalTitle - Variable in class org.grobid.core.features.FeaturesVectorReference
 
isKnownPublisher - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
isKnownPublisher - Variable in class org.grobid.core.features.FeaturesVectorReference
 
isPdf() - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
isPunct - Variable in class org.grobid.core.features.FeatureFactory
 
isPunctuation(String) - Method in class org.grobid.core.lexicon.Lexicon
Indicate if we have a punctuation
isRecursive() - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
isResourcesInHome() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns if resources like firstnames, lastnames and countries are supposed to be read from grobid-home folder, given in the grobid-property file.
isSelfInstanceRefExtractor - Variable in class org.grobid.core.annotations.TeiStAXParser
If ReferenceExtractor is instantiated by TeiStAXParser or passed as an argument.
isTitleMatchNum() - Method in class org.grobid.core.document.Document
 
isUsableMethod(String) - Static method in class org.grobid.core.engines.ProcessEngine
Check if the method is usable.
isUseLanguageId() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns if a language id shall be used, given in the grobid-property file.
italic - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
italic - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
italic - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
italic - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
italic - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
italic - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
item - Variable in class org.grobid.core.data.BiblioItem
 

J

jan - Static variable in class org.grobid.core.engines.DateParser
 
journalArticleBlock - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
journalIssueBlock - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
journalMetadataBlock - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
journalsPositions - Variable in class org.grobid.core.sax.MarecSaxParser
 
jul - Static variable in class org.grobid.core.engines.DateParser
 
jun - Static variable in class org.grobid.core.engines.DateParser
 

K

KeyGen - Class in org.grobid.core.utilities
Generate a random key.
KeyGen() - Constructor for class org.grobid.core.utilities.KeyGen
 
Keyword - Class in org.grobid.core.data
Class for representing a keyword extracted from a publication.
Keyword(String) - Constructor for class org.grobid.core.data.Keyword
 
Keyword(String, String) - Constructor for class org.grobid.core.data.Keyword
 
keywords - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
KEYWORDSPUB - Static variable in class org.grobid.core.features.FeatureFactory
 
KIND_CODES - Static variable in class org.grobid.core.features.FeatureFactory
 

L

label - Variable in class org.grobid.core.document.DocumentNode
 
label(Iterable<String>) - Method in class org.grobid.core.engines.AbstractParser
 
label(String) - Method in class org.grobid.core.engines.AbstractParser
 
label(Iterable<String>) - Method in class org.grobid.core.engines.tagging.CRFPPTagger
 
label(String) - Method in class org.grobid.core.engines.tagging.CRFPPTagger
 
label(Iterable<String>) - Method in interface org.grobid.core.engines.tagging.GenericTagger
 
label(String) - Method in interface org.grobid.core.engines.tagging.GenericTagger
 
label(Iterable<String>) - Method in class org.grobid.core.engines.tagging.WapitiTagger
 
label(String) - Method in class org.grobid.core.engines.tagging.WapitiTagger
 
label - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
label - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
label - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
label - Variable in class org.grobid.core.features.FeaturesVectorDate
 
label - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
label - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
label - Variable in class org.grobid.core.features.FeaturesVectorName
 
label - Variable in class org.grobid.core.features.FeaturesVectorReference
 
label - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
label - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
label(String) - Method in class org.grobid.core.jni.WapitiModel
 
label(SWIGTYPE_p_mdl_t, String) - Static method in class org.grobid.core.jni.WapitiWrapper
 
LABELED_REFERENCE_RESULT_FUNCTION - Static variable in class org.grobid.core.engines.citations.RegexReferenceSegmenter
 
LabeledReferenceResult - Class in org.grobid.core.engines.citations
User: zholudev Date: 4/15/14
LabeledReferenceResult(String, String) - Constructor for class org.grobid.core.engines.citations.LabeledReferenceResult
 
LabeledReferenceResult(String) - Constructor for class org.grobid.core.engines.citations.LabeledReferenceResult
 
LabeledReferenceResult(String, String, String) - Constructor for class org.grobid.core.engines.citations.LabeledReferenceResult
 
Language - Class in org.grobid.core.lang
Date: 11/24/11 Time: 11:39 AM
Language(String, double) - Constructor for class org.grobid.core.lang.Language
 
LanguageDetector - Interface in org.grobid.core.lang
User: zholudev Date: 11/24/11 Time: 11:03 AM
LanguageDetectorFactory - Interface in org.grobid.core.lang
User: zholudev Date: 11/24/11 Time: 11:03 AM
languages - Static variable in class org.grobid.core.engines.patent.PatentRefParser
 
LanguageUtilities - Class in org.grobid.core.utilities
Class for using language guessers (singleton).
lastName - Variable in class org.grobid.core.features.FeaturesVectorName
 
lastPageBlock - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
lastToken - Variable in class org.grobid.core.layout.Block
 
launchMethod(Object, Object[], String) - Static method in class org.grobid.core.utilities.Utilities
Call a java method using the method name given in string.
launchMethod(Object, Object[], Class[], String) - Static method in class org.grobid.core.utilities.Utilities
Call a java method using the method name given in string.
LayoutToken - Class in org.grobid.core.layout
Class for representing the layout information associated to a PDF object.
LayoutToken() - Constructor for class org.grobid.core.layout.LayoutToken
 
LayoutTokenization - Class in org.grobid.core.layout
Class for representing a tokenization of document section where tokens include layout attributes.
LayoutTokenization(List<String>, List<LayoutToken>) - Constructor for class org.grobid.core.layout.LayoutTokenization
 
LESS_THAN - Static variable in class org.grobid.core.utilities.TextUtilities
 
LevenshteinDistanceAligment<E> - Class in org.grobid.core.utilities
Distance and aligment of strings based on Levenshtein edit distances using the standard Dynamic Programming algorithm.
LevenshteinDistanceAligment(E[], E[]) - Constructor for class org.grobid.core.utilities.LevenshteinDistanceAligment
 
LevenshteinDistanceAligment.Op - Enum in org.grobid.core.utilities
 
lexicon - Variable in class org.grobid.core.engines.AffiliationAddressParser
 
lexicon - Variable in class org.grobid.core.engines.CitationParser
 
lexicon - Variable in class org.grobid.core.engines.patent.ReferenceExtractor
 
lexicon - Variable in class org.grobid.core.features.FeatureFactory
 
Lexicon - Class in org.grobid.core.lexicon
Class for managing all the lexical resources.
lexicon - Variable in class org.grobid.core.sax.MarecSaxParser
 
LibraryLoader - Class in org.grobid.core.main
 
LibraryLoader() - Constructor for class org.grobid.core.main.LibraryLoader
 
line - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
lineLength - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
lineLength - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
lineStatus - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
lineStatus - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
lineStatus - Variable in class org.grobid.core.features.FeaturesVectorDate
 
lineStatus - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
lineStatus - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
lineStatus - Variable in class org.grobid.core.features.FeaturesVectorName
 
lineStatus - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
lineStatus - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
load() - Static method in class org.grobid.core.main.LibraryLoader
 
load_GROBID_HOME_PATH() - Static method in class org.grobid.core.utilities.GrobidProperties
Load the path to GROBID_HOME from the env-entry set in web.xml.
loadGrobidPropertiesPath() - Static method in class org.grobid.core.utilities.GrobidProperties
Load the path to grobid.properties from the env-entry set in web.xml.
loadPdf2XMLPath() - Static method in class org.grobid.core.utilities.GrobidProperties
Returns the path to the home folder of pdf2xml.
loadTerm(String) - Method in class org.grobid.core.lexicon.FastMatcher
Load a term to the fast matcher
loadTerms(File) - Method in class org.grobid.core.lexicon.FastMatcher
Load a set of terms to the fast matcher from a file listing terms one per line
locationName - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
locationName - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
locationName - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
locationName - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
locationName - Variable in class org.grobid.core.features.FeaturesVectorReference
 
locationName - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
locationName - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
LOGGER - Static variable in class org.grobid.core.engines.citations.AdditionalRegexTextSegmenter
 
LOGGER - Static variable in class org.grobid.core.engines.EngineParsers
 
LOGGER - Static variable in class org.grobid.core.engines.tagging.CRFPPTagger
 
LOGGER - Static variable in class org.grobid.core.jni.WapitiModel
 
LOGGER - Static variable in class org.grobid.core.sax.MarecSaxParser
 
LOGGER - Static variable in class org.grobid.core.sax.PDF2XMLSaxParser
The Logger.
LOGGER - Static variable in class org.grobid.core.utilities.GrobidProperties
 
LOGGER - Static variable in class org.grobid.core.utilities.LanguageUtilities
 

M

main(String[]) - Static method in class org.grobid.core.engines.citations.AdditionalRegexTextSegmenter
 
main(String[]) - Static method in class org.grobid.core.main.batch.GrobidMain
Starts Grobid from command line using the following parameters:
main(String[]) - Static method in class org.grobid.core.utilities.LevenshteinDistanceAligment
 
makeObject() - Method in class org.grobid.core.factory.GrobidPoolingFactory
Manual - Static variable in class org.grobid.core.data.BiblioItem
 
mapLanguageCode(String) - Method in class org.grobid.core.lexicon.Lexicon
Map the language codes used by the language identifier component to the normal language name.
mar - Static variable in class org.grobid.core.engines.DateParser
 
MarecSaxParser - Class in org.grobid.core.sax
SAX parser initially made for XML CLEF IP data (collection, training and topics).
MarecSaxParser() - Constructor for class org.grobid.core.sax.MarecSaxParser
 
markReferencesFigureTEI(String, List<NonTextObject>) - Method in class org.grobid.core.document.TEIFormater
 
markReferencesTEI(String, List<LayoutToken>, List<BibDataSet>, boolean) - Method in class org.grobid.core.document.TEIFormater
Mark using TEI annotations the identified references in the text body build with the machine learning model.
MasterThesis - Static variable in class org.grobid.core.data.BiblioItem
 
matcher(String) - Method in class org.grobid.core.lexicon.FastMatcher
Identify terms in a piece of text and gives corresponding token positions.
matcher(List<String>) - Method in class org.grobid.core.lexicon.FastMatcher
Identify terms in a piece of text and gives corresponding token positions.
may - Static variable in class org.grobid.core.engines.DateParser
 
MIN_LENGTH - Static variable in class org.grobid.core.utilities.KeyGen
Minimum length for a decent key
MockContext - Class in org.grobid.core.mock
 
MockContext() - Constructor for class org.grobid.core.mock.MockContext
 
mockContextIfNotSet() - Static method in class org.grobid.core.main.LibraryLoader
Initialize the context with mock parameters if they doesn't already exist.
ModelMap - Class in org.grobid.core.engines
Class that creates a tagger from a given model or reuse it if it already exists.
ModelMap() - Constructor for class org.grobid.core.engines.ModelMap
 
month - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
month - Variable in class org.grobid.core.features.FeaturesVectorDate
 
month - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
month - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
month - Variable in class org.grobid.core.features.FeaturesVectorReference
 
month - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
month - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
months - Static variable in class org.grobid.core.engines.DateParser
 
MONTHS - Static variable in class org.grobid.core.features.FeatureFactory
 

N

NameToStructureResolver - Class in org.grobid.core.engines.entities
Chemical name-to-structure processing based on external Open Source libraries.
NameToStructureResolver() - Constructor for class org.grobid.core.engines.entities.NameToStructureResolver
 
nbAllRef - Variable in class org.grobid.core.sax.MarecSaxParser
 
NEW_LINE - Static variable in class org.grobid.core.utilities.TextUtilities
 
newInstance() - Static method in class org.grobid.core.factory.GrobidFactory
Creates a new instance of GrobidFactory.
newInstance() - Static method in class org.grobid.core.factory.GrobidFactoryFullInit
Creates a new instance of GrobidFactory.
newInstance() - Static method in class org.grobid.core.factory.GrobidPoolingFactory
Creates and returns an instance of GROBIDFactory.
newline - Variable in class org.grobid.core.features.FeatureFactory
 
newPoolInstance() - Static method in class org.grobid.core.factory.GrobidPoolingFactory
Creates a pool for Engine objects.
NO_CERTAINTY - Static variable in interface org.grobid.core.utilities.TeiValues
 
NonTextObject - Class in org.grobid.core.document
Class for representing figure or table objects occurring within a document.
NonTextObject() - Constructor for class org.grobid.core.document.NonTextObject
 
normalize(Date) - Method in class org.grobid.core.engines.DateParser
 
normalizeName(String) - Static method in class org.grobid.core.data.Person
 
normalizeRegex(String) - Static method in class org.grobid.core.utilities.TextUtilities
 
notNull() - Method in class org.grobid.core.data.Affiliation
 
notNull() - Method in class org.grobid.core.data.Date
 
notNull() - Method in class org.grobid.core.data.Keyword
 
notNull() - Method in class org.grobid.core.data.Person
 
nov - Static variable in class org.grobid.core.engines.DateParser
 
nplReferences - Variable in class org.grobid.core.sax.MarecSaxParser
 

O

oct - Static variable in class org.grobid.core.engines.DateParser
 
OffsetPosition - Class in org.grobid.core.utilities
 
OffsetPosition() - Constructor for class org.grobid.core.utilities.OffsetPosition
 
online - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
openDb() - Method in class org.grobid.core.utilities.Consolidation
Open database connection
ops - Variable in class org.grobid.core.engines.patent.ReferenceExtractor
 
OPSService - Class in org.grobid.core.document
Usage of the EPO OPS service for online interactive version of patent document retrieval.
OPSService() - Constructor for class org.grobid.core.document.OPSService
 
OR - Static variable in class org.grobid.core.utilities.TextUtilities
 
org.grobid.core - package org.grobid.core
 
org.grobid.core.analyzers - package org.grobid.core.analyzers
 
org.grobid.core.annotations - package org.grobid.core.annotations
 
org.grobid.core.data - package org.grobid.core.data
 
org.grobid.core.data.util - package org.grobid.core.data.util
 
org.grobid.core.document - package org.grobid.core.document
 
org.grobid.core.engines - package org.grobid.core.engines
 
org.grobid.core.engines.citations - package org.grobid.core.engines.citations
 
org.grobid.core.engines.counters - package org.grobid.core.engines.counters
 
org.grobid.core.engines.ebook - package org.grobid.core.engines.ebook
 
org.grobid.core.engines.entities - package org.grobid.core.engines.entities
 
org.grobid.core.engines.patent - package org.grobid.core.engines.patent
 
org.grobid.core.engines.tagging - package org.grobid.core.engines.tagging
 
org.grobid.core.exceptions - package org.grobid.core.exceptions
 
org.grobid.core.factory - package org.grobid.core.factory
 
org.grobid.core.features - package org.grobid.core.features
 
org.grobid.core.jni - package org.grobid.core.jni
 
org.grobid.core.lang - package org.grobid.core.lang
 
org.grobid.core.lang.impl - package org.grobid.core.lang.impl
 
org.grobid.core.layout - package org.grobid.core.layout
 
org.grobid.core.lexicon - package org.grobid.core.lexicon
 
org.grobid.core.main - package org.grobid.core.main
 
org.grobid.core.main.batch - package org.grobid.core.main.batch
 
org.grobid.core.mock - package org.grobid.core.mock
 
org.grobid.core.process - package org.grobid.core.process
 
org.grobid.core.sax - package org.grobid.core.sax
 
org.grobid.core.utilities - package org.grobid.core.utilities
 
org.grobid.core.utilities.counters - package org.grobid.core.utilities.counters
 
org.grobid.core.utilities.counters.impl - package org.grobid.core.utilities.counters.impl
 
outputStream - Variable in class org.grobid.core.annotations.TeiStAXParser
Output file used to append annotated publications.

P

pageStatus - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
pageStatus - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
Pair<A,B> - Class in org.grobid.core.utilities
 
Pair(A, B) - Constructor for class org.grobid.core.utilities.Pair
 
Paragraph - Class in org.grobid.core.annotations
Contains the information of a paragraph.
Paragraph() - Constructor for class org.grobid.core.annotations.Paragraph
Empty constructor.
Paragraph(String, String, int, int, StartElement, boolean) - Constructor for class org.grobid.core.annotations.Paragraph
Constructor.
Paragraph(int) - Constructor for class org.grobid.core.annotations.Paragraph
This field is used by the method equals.
paragraphs - Variable in class org.grobid.core.annotations.Description
The list of all paragraphs parsed.
parse() - Method in class org.grobid.core.annotations.TeiStAXParser
Parse and annotate this input file.
Passage - Class in org.grobid.core.data
Class for managing passage of citations.
Passage() - Constructor for class org.grobid.core.data.Passage
 
passivateObject(Object) - Method in class org.grobid.core.factory.GrobidPoolingFactory
PatentAnnotationSaxParser - Class in org.grobid.core.sax
This SAX parser mirror the input XML document, and add as extra annotation identified reference to patent and NPL.
PatentAnnotationSaxParser() - Constructor for class org.grobid.core.sax.PatentAnnotationSaxParser
 
PatentDocument - Class in org.grobid.core.document
Class for additional information for patent document.
PatentDocument(DocumentSource) - Constructor for class org.grobid.core.document.PatentDocument
 
PatentItem - Class in org.grobid.core.data
Class for managing patent bibliographical references.
PatentItem() - Constructor for class org.grobid.core.data.PatentItem
 
patentReferences - Variable in class org.grobid.core.sax.MarecSaxParser
 
PatentRefParser - Class in org.grobid.core.engines.patent
Parser for patent references based on regular language rewriting.
PatentRefParser() - Constructor for class org.grobid.core.engines.patent.PatentRefParser
 
patents - Variable in class org.grobid.core.annotations.Annotation
List the the patent items.
PATHES_TO_CREATE - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
The defined paths to create.
pauseTimer() - Method in class org.grobid.core.utilities.counters.GrobidTimer
Stop time count.
pdf2xml(boolean, boolean, int, int, File, File, boolean) - Method in class org.grobid.core.document.DocumentSource
Create an XML representation from a pdf file.
PDF2XMLSaxParser - Class in org.grobid.core.sax
SAX parser for XML representation of PDF files obtained via xpdf pdf2xml.
PDF2XMLSaxParser() - Constructor for class org.grobid.core.sax.PDF2XMLSaxParser
 
PDF2XMLSaxParser(Document, List<String>) - Constructor for class org.grobid.core.sax.PDF2XMLSaxParser
 
Periodical - Static variable in class org.grobid.core.data.BiblioItem
 
Person - Class in org.grobid.core.data
Class for representing and exchanging person information, e.g.
Person() - Constructor for class org.grobid.core.data.Person
 
PhdThesis - Static variable in class org.grobid.core.data.BiblioItem
 
positionEnd - Variable in class org.grobid.core.annotations.Paragraph
The end position in Description.
positionStart - Variable in class org.grobid.core.annotations.Paragraph
The start position in Description.
postProcessPages() - Method in class org.grobid.core.data.BiblioItem
Correct fields of the first biblio item based on the second one and he reference string.
postProcessVolumeBlock() - Method in class org.grobid.core.data.BiblioItem
Post process the volume block in order to distinguish when possible and when appropriate volume and issue
printRefTitles(List<BibDataSet>) - Method in class org.grobid.core.engines.Engine
Return all the reference titles.
printVector() - Method in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
printVector() - Method in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
printVector() - Method in class org.grobid.core.features.FeaturesVectorCitation
 
printVector() - Method in class org.grobid.core.features.FeaturesVectorDate
 
printVector() - Method in class org.grobid.core.features.FeaturesVectorFulltext
 
printVector() - Method in class org.grobid.core.features.FeaturesVectorHeader
 
printVector(boolean) - Method in class org.grobid.core.features.FeaturesVectorHeader
 
printVector() - Method in class org.grobid.core.features.FeaturesVectorName
 
printVector() - Method in class org.grobid.core.features.FeaturesVectorReference
 
printVector() - Method in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
printVector() - Method in class org.grobid.core.features.FeaturesVectorSegmentation
 
PriorArtCitation - Class in org.grobid.core.data
Class for managing citation of patent bibliographical references.
PriorArtCitation() - Constructor for class org.grobid.core.data.PriorArtCitation
 
Proceedings - Static variable in class org.grobid.core.data.BiblioItem
 
proceedingsMetadataBlock - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
process(String) - Static method in class org.grobid.core.engines.entities.NameToStructureResolver
 
process(List<String>) - Static method in class org.grobid.core.process.ProcessPdf2Xml
Process the conversion.
processAffiliation(String) - Method in class org.grobid.core.engines.Engine
Parse a text block corresponding to an affiliation+address.
processAffiliation(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process the affiliation using pGbdArgs parameters.
processAffiliations(List<String>) - Method in class org.grobid.core.engines.Engine
Parse a list of text blocks corresponding to an affiliation+address.
processAllCitationsInPatent(String, List<BibDataSet>, List<PatentItem>, boolean) - Method in class org.grobid.core.engines.Engine
Extract and parse both patent and non patent references within a patent text.
processAllCitationsInPDFPatent(String, List<BibDataSet>, List<PatentItem>, boolean) - Method in class org.grobid.core.engines.Engine
Extract and parse both patent and non patent references within a patent in PDF format.
processAllCitationsInXMLPatent(String, List<BibDataSet>, List<PatentItem>, boolean) - Method in class org.grobid.core.engines.Engine
Extract and parse both patent and non patent references within a patent in ST.36 format.
processArgs(String[]) - Static method in class org.grobid.core.main.batch.GrobidMain
Process batch given the args.
processAuthorsCitation(String) - Method in class org.grobid.core.engines.Engine
Parse a sequence of authors from a citation, i.e.
processAuthorsCitation(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process the author citation using pGbdArgs parameters.
processAuthorsCitationLists(List<String>) - Method in class org.grobid.core.engines.Engine
Parse a list of independent sequences of authors from citations.
processAuthorsHeader(String) - Method in class org.grobid.core.engines.Engine
Parse a sequence of authors from a header, i.e.
processAuthorsHeader(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process the author header using pGbdArgs parameters.
processCitationPatentPDF(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process a patent available in PDF using pGbdArgs parameters.
processCitationPatentST36(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process a patent encoded in ST.36 using pGbdArgs parameters.
processCitationPatentTEI(String, String, boolean) - Method in class org.grobid.core.engines.Engine
 
processCitationPatentTEI(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process a patent encoded in TEI using pGbdArgs parameters.
processCitationPatentTXT(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process a patent in utf-8 text using pGbdArgs parameters.
processDate(String) - Method in class org.grobid.core.engines.Engine
Parse a raw string containing dates.
processDate(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process the date using pGbdArgs parameters.
processDates(List<String>) - Method in class org.grobid.core.engines.Engine
Parse a list of raw dates.
processDescription() - Method in class org.grobid.core.annotations.TeiStAXParser
Process the description.
processEndElement(XMLEvent) - Method in class org.grobid.core.annotations.TeiStAXParser
Process end tag.
ProcessEngine - Class in org.grobid.core.engines
Perform the batch processing for the different engine methods.
ProcessEngine() - Constructor for class org.grobid.core.engines.ProcessEngine
 
processExtraction() - Method in class org.grobid.core.annotations.TeiStAXParser
Process the extraction of the current publication.
processFullText(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process the full text using pGbdArgs parameters.
processHeader(String, boolean, BiblioItem) - Method in class org.grobid.core.engines.Engine
Apply a parsing model for the header of a PDF file based on CRF, using first three pages of the PDF
processHeader(String, boolean, int, int, BiblioItem) - Method in class org.grobid.core.engines.Engine
Apply a parsing model for the header of a PDF file based on CRF, using dynamic range of pages as header
processHeader(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process the headers using pGbdArgs parameters.
processing(String) - Method in class org.grobid.core.engines.AffiliationAddressParser
 
processing(List<String>, boolean) - Method in class org.grobid.core.engines.AuthorParser
Processing of authors in header or citation
processing(String, boolean) - Method in class org.grobid.core.engines.CitationParser
 
processing(String) - Method in class org.grobid.core.engines.DateParser
Processing of authors in header
processing(String, boolean, boolean, int, String, int, int, boolean, boolean) - Method in class org.grobid.core.engines.FullTextParser
Machine-learning recognition of the complete full text structures.
processing(String, boolean, BiblioItem) - Method in class org.grobid.core.engines.HeaderParser
Processing with application of the segmentation model
processing(String) - Method in class org.grobid.core.engines.Segmentation
Segment a PDF document into high level zones: cover page, document header, page footer, page header, body, page numbers, biblio section and annexes.
processing(String, String) - Method in class org.grobid.core.engines.Segmentation
Segment a PDF document into high level zones: cover page, document header, page footer, page header, body, page numbers, biblio section and annexes.
processing(String, String, int, int) - Method in class org.grobid.core.engines.Segmentation
Segment a PDF document into high level zones: cover page, document header, page footer, page header, body, page numbers, biblio section and annexes.
processing2(String, boolean, BiblioItem, int, int) - Method in class org.grobid.core.engines.HeaderParser
Processing without application of the segmentation model, regex are used to identify the header zone.
processingCitation(List<String>) - Method in class org.grobid.core.engines.AuthorParser
Processing of authors in citations
processingHeader(List<String>) - Method in class org.grobid.core.engines.AuthorParser
 
processingHeaderBlock(boolean, Document, BiblioItem) - Method in class org.grobid.core.engines.HeaderParser
Header processing after identification of the header blocks with heuristics (old approach)
processingHeaderSection(Document, boolean, BiblioItem) - Method in class org.grobid.core.engines.HeaderParser
Header processing after application of the segmentation model (new approach)
processingReferenceSection(Document, ReferenceSegmenter, boolean) - Method in class org.grobid.core.engines.CitationParser
 
processingReferenceSection(String, ReferenceSegmenter, boolean) - Method in class org.grobid.core.engines.CitationParser
 
processParagraphEndTag(String) - Method in class org.grobid.core.annotations.TeiStAXParsedInfo
When the parser is inside a paragraph (See #processParagraphStartTag(String, Iterator), this method is called to notify that the parser is finishing to parse a paragraph or not.
processParagraphStartTag(StartElement) - Method in class org.grobid.core.annotations.TeiStAXParsedInfo
When the parser is in a description, this method is called to process the start of a paragraph.
ProcessPdf2Xml - Class in org.grobid.core.process
 
ProcessPdf2Xml() - Constructor for class org.grobid.core.process.ProcessPdf2Xml
 
processRawReference(String, boolean) - Method in class org.grobid.core.engines.Engine
Apply a parsing model for a given single raw reference string based on CRF
processRawReference(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process the raw reference using pGbdArgs parameters.
processRawReferences(List<String>, boolean) - Method in class org.grobid.core.engines.Engine
Apply a parsing model for a set of raw reference text based on CRF
processRawRefText() - Method in class org.grobid.core.engines.patent.PatentRefParser
 
processReferences(String, boolean) - Method in class org.grobid.core.engines.Engine
Apply a parsing model to the reference block of a PDF file based on CRF
processReferences(GrobidMainArgs) - Method in class org.grobid.core.engines.ProcessEngine
Process all the references using pGbdArgs parameters.
processReflow(String, List<String>) - Method in class org.grobid.core.engines.AffiliationAddressParser
Post processing of extracted field affiliation and address.
ProcessRunner - Class in org.grobid.core.process
Date: 6/26/12 Time: 3:55 PM
ProcessRunner(List<String>, String, boolean) - Constructor for class org.grobid.core.process.ProcessRunner
 
processStartElement(XMLEvent) - Method in class org.grobid.core.annotations.TeiStAXParser
Process start tag.
PROP_3RD_PARTY_PDF2XML - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_3RD_PARTY_PDF2XML_MEMORY_LIMIT - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_CROSSREF_HOST - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_CROSSREF_ID - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_CROSSREF_PORT - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_CROSSREF_PW - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_GROBID_CRF_ENGINE - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_GROBID_HOME - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
The name of the env-entry located in the web.xml, via which the grobid-service.propeties path is set.
PROP_GROBID_IS_CONTEXT_SERVER - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_GROBID_MAX_CONNECTIONS - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_GROBID_POOL_MAX_WAIT - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_GROBID_PROPERTY - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
The name of the env-entry located in the web.xml, via which the grobid.propeties path is set.
PROP_GROBID_SERVICE_ADMIN_PW - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
name of the property setting the admin password
PROP_GROBID_SERVICE_IS_PARALLEL_EXEC - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
If set to true, parallel execution will be done, else a queuing of requests will be done.
PROP_GROBID_SERVICE_PROPERTY - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
The name of the system property, via which the grobid home folder can be located.
PROP_LANG_DETECTOR_FACTORY - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_MYSQL_DB_NAME - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_MYSQL_HOST - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_MYSQL_PORT - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_MYSQL_PW - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_MYSQL_USERNAME - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_NATIVE_LIB_PATH - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_NB_THREADS - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_PROXY_HOST - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_PROXY_PORT - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_RESOURCE_INHOME - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
Determines if properties like the firstnames, lastnames country codes and dictionaries are supposed to be read from $GROBID_HOME path or not (possible values (true|false) default is false)
PROP_TEST_MODE - Static variable in class org.grobid.core.utilities.GrobidProperties
name of property which determines, if grobid runs in test mode.
PROP_TMP_PATH - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_USE_LANG_ID - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
PROP_VERSION - Static variable in interface org.grobid.core.utilities.GrobidPropertyKeys
 
properName - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
properName - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
properName - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
properName - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
properName - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
properName - Variable in class org.grobid.core.features.FeaturesVectorReference
 
properName - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
properName - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
props - Static variable in class org.grobid.core.utilities.GrobidProperties
Internal property object, where all properties are defined.
publishersPositions - Variable in class org.grobid.core.sax.MarecSaxParser
 
punctType - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
punctType - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
punctType - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
punctType - Variable in class org.grobid.core.features.FeaturesVectorDate
 
punctType - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
punctType - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
punctType - Variable in class org.grobid.core.features.FeaturesVectorName
 
punctType - Variable in class org.grobid.core.features.FeaturesVectorReference
 
punctType - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
punctType - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
punctuationProfile - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
punctuationProfile - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
punctuationProfile(String) - Static method in class org.grobid.core.utilities.TextUtilities
Give the punctuation profile of a line, i.e.
punctuations - Static variable in class org.grobid.core.utilities.TextUtilities
 
punctuationsAll - Static variable in class org.grobid.core.data.BiblioItem
 
punctuationsSub - Static variable in class org.grobid.core.data.BiblioItem
 
punctuationsSub - Static variable in class org.grobid.core.utilities.Utilities
 

Q

QUOTE - Static variable in class org.grobid.core.utilities.TextUtilities
 
QUOTE - Static variable in class org.grobid.core.utilities.XmlUtils
 

R

r - Static variable in class org.grobid.core.utilities.KeyGen
The random number generator.
rawDescription - Variable in class org.grobid.core.annotations.Description
The raw description containing all the text of paragraphs.
read() - Method in class org.grobid.core.process.StreamGobbler
 
read(byte[]) - Method in class org.grobid.core.process.StreamGobbler
 
read(byte[], int, int) - Method in class org.grobid.core.process.StreamGobbler
 
read() - Method in class org.grobid.core.process.StreamProcess
 
read(byte[]) - Method in class org.grobid.core.process.StreamProcess
 
read(byte[], int, int) - Method in class org.grobid.core.process.StreamProcess
 
read(byte[]) - Method in class org.grobid.core.utilities.XMLFilterFileInputStream
 
read(byte[], int, int) - Method in class org.grobid.core.utilities.XMLFilterFileInputStream
 
read() - Method in class org.grobid.core.utilities.XMLFilterFileInputStream
 
reader - Variable in class org.grobid.core.annotations.TeiStAXParser
readFile(String) - Static method in class org.grobid.core.utilities.Utilities
Read a file and return the content.
realNumber - Variable in class org.grobid.core.document.DocumentNode
 
reconnectBlocks() - Method in class org.grobid.core.document.Document
Try to reconnect blocks cut because of layout constraints (new col., new page, inserted figure, etc.) -> not used anymore
reference2BibTeX(String, List<BibDataSet>, int) - Static method in class org.grobid.core.engines.Engine
Get the BibTeX string corresponding to the recognized citation section for a given citation
reference2BibTeX(int) - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Get the BibTeX string corresponding to the recognized citation section for a given citation
reference2TEI(String, List<BibDataSet>, int) - Static method in class org.grobid.core.engines.Engine
Get the TEI XML string corresponding to the recognized citation section for a particular citation
reference2TEI(int) - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Get the TEI XML string corresponding to the recognized citation section for a particular citation
ReferenceExtractor - Class in org.grobid.core.engines.patent
Extraction of patent and NPL references from the content body of patent document with Conditional Random Fields.
ReferenceExtractor() - Constructor for class org.grobid.core.engines.patent.ReferenceExtractor
 
ReferenceExtractor(EngineParsers) - Constructor for class org.grobid.core.engines.patent.ReferenceExtractor
 
references - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
references2BibTeX(String, List<BibDataSet>) - Method in class org.grobid.core.engines.Engine
Get the BibTeX string corresponding to the recognized citation section
references2BibTeX() - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Get the BibTeX string corresponding to the recognized citation section
references2TEI(String, List<BibDataSet>) - Static method in class org.grobid.core.engines.Engine
Get the TEI XML string corresponding to the recognized citation section, with pointers and advanced structuring
references2TEI() - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Get the TEI XML string corresponding to the recognized citation section, with pointers and advanced structuring
references2TEI2(String, List<BibDataSet>) - Static method in class org.grobid.core.engines.Engine
Get the TEI XML string corresponding to the recognized citation section
references2TEI2() - Method in class org.grobid.core.engines.patent.ReferenceExtractor
Get the TEI XML string corresponding to the recognized citation section
ReferenceSegmenter - Interface in org.grobid.core.engines.citations
User: zholudev, patrice Date: 4/15/14
ReferenceSegmenterParser - Class in org.grobid.core.engines
 
ReferenceSegmenterParser() - Constructor for class org.grobid.core.engines.ReferenceSegmenterParser
 
referencesNPL - Variable in class org.grobid.core.sax.MarecSaxParser
 
referencesPatent - Variable in class org.grobid.core.sax.MarecSaxParser
 
RegexReferenceSegmenter - Class in org.grobid.core.engines.citations
User: zholudev Date: 2/26/14
RegexReferenceSegmenter() - Constructor for class org.grobid.core.engines.citations.RegexReferenceSegmenter
 
reinit() - Method in class org.grobid.core.annotations.TeiStAXParser
Reinitialize some objects to use them for the next elements to parse.
rejectAsReference() - Method in class org.grobid.core.data.BiblioItem
Check is the biblio item can be considered as a minimally valid bibliographical reference.
relativeDocumentPosition - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
relativeDocumentPosition - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
relativeDocumentPosition - Variable in class org.grobid.core.features.FeaturesVectorReference
 
relativeDocumentPosition - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
relativeLocation(int, int, int) - Method in class org.grobid.core.features.FeatureFactory
Give the relative position base on charcater or token numbers discretized into nbBins
relativeLocation(double, double, int) - Method in class org.grobid.core.features.FeatureFactory
Give the relative position based on layout coordinates discretized into nbBins
relativePagePosition - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
relativePagePosition - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
relativePagePositionChar - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
relativePosition - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
relativePosition - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
reload() - Static method in class org.grobid.core.utilities.GrobidProperties
Reload GrobidServiceProperties.
removeAccents(String) - Static method in class org.grobid.core.utilities.TextUtilities
To replace accented characters in a unicode string by unaccented equivalents: é -> e, ü -> ue, ß -> ss, etc.
removeLast() - Method in class org.grobid.core.utilities.GornIndex
Remove the last element of index.
removeMetric(String) - Method in interface org.grobid.core.utilities.counters.CntManager
 
resBib - Variable in class org.grobid.core.engines.patent.ReferenceExtractor
 
reset() - Method in class org.grobid.core.analyzers.GrobidFilterDeleteSpaceBetweenSameAlphabet
 
reset() - Method in class org.grobid.core.data.BiblioItem
Reinit all the values of the current bibliographical item
reset() - Static method in class org.grobid.core.utilities.GrobidProperties
Resets this class and all its static fields.
resetDescription() - Method in class org.grobid.core.annotations.Description
Reset the description to be used again.
resetDescription() - Method in class org.grobid.core.annotations.TeiStAXParsedInfo
Reset the description to process a new one.
resetTokens() - Method in class org.grobid.core.layout.Block
 
resetWriter() - Method in class org.grobid.core.utilities.XMLWriter
Re initialize the writer.
restartTimer() - Method in class org.grobid.core.utilities.counters.GrobidTimer
Restart the timer when it has been paused by GrobidTimer.pauseTimer().
resultExtraction(String, boolean, List<String>) - Method in class org.grobid.core.engines.CitationParser
Extract results from a labelled header.
resultExtraction(String, ArrayList<String>) - Method in class org.grobid.core.engines.entities.ChemicalParser
Extract results from a labelled header.
resultExtraction(String, boolean, List<String>, BiblioItem) - Method in class org.grobid.core.engines.HeaderParser
Extract results from a labelled header.
resultSegmentation(Document, String, List<String>) - Static method in class org.grobid.core.document.BasicStructureBuilder
Set the main segments of the document based on the full text parsing results
retokenize(List<String>) - Method in class org.grobid.core.analyzers.GrobidAnalyzer
Re-tokenizer entry point to be applied to text already tokenized in the PDF representation
retokenize(Language, List<String>) - Method in class org.grobid.core.analyzers.GrobidAnalyzer
 
retokenize(List<String>) - Static method in class org.grobid.core.analyzers.GrobidDefaultAnalyzer
 
returnEngine(Engine) - Static method in class org.grobid.core.factory.GrobidPoolingFactory
By contract, engine must have been obtained using GrobidPoolingFactory.getEngineFromPool().
rotation - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
rotation - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
run() - Method in class org.grobid.core.process.ProcessRunner
 
run() - Method in class org.grobid.core.process.StreamProcess
 
runLanguageId(String, String) - Method in class org.grobid.core.engines.Engine
Perform a language identification
runLanguageId(String) - Method in class org.grobid.core.engines.Engine
Basic run for language identification, default is on the body of the current document.
runLanguageId(String) - Method in class org.grobid.core.utilities.LanguageUtilities
Basic run for language identification, return the language code and confidence score separated by a semicolon
runLanguageId(String, int) - Method in class org.grobid.core.utilities.LanguageUtilities
Less basic run for language identification, where a maxumum length of text is used to identify the language.

S

searchReport - Static variable in class org.grobid.core.document.PatentDocument
 
secondString - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
segment(String, String) - Static method in class org.grobid.core.utilities.TextUtilities
Segment piece of text following a list of segmentation characters.
segmentAndProcessHeader(String, boolean, BiblioItem) - Method in class org.grobid.core.engines.Engine
Use the segmentation model to identify the header section of a PDF file, then apply a parsing model for the header based on CRF
Segmentation - Class in org.grobid.core.engines
Realise a high level segmentation of a document into cover page, document header, page footer, page header, document body, bibliographical section, each bibliographical references in the biblio section and finally the possible annexes.
Segmentation() - Constructor for class org.grobid.core.engines.Segmentation
TODO some documentation...
SegmentationLabel - Enum in org.grobid.core.engines
 
segmentKeywords(String) - Static method in class org.grobid.core.data.BiblioItem
Keyword field segmentation.
sep - Static variable in class org.grobid.core.engines.DateParser
 
serialize(CntManager, OutputStream) - Method in interface org.grobid.core.utilities.counters.CntManagerSaver
 
serialize(CntManager, OutputStream) - Method in class org.grobid.core.utilities.counters.impl.CntManagerSaverImpl
 
Serie - Static variable in class org.grobid.core.data.BiblioItem
 
serieMetadataBlock - Variable in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
set(long) - Method in interface org.grobid.core.utilities.counters.Counter
 
set_GROBID_HOME_PATH(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Set the GROBID_HOME path.
setA_Day(String) - Method in class org.grobid.core.data.BiblioItem
 
setA_Month(String) - Method in class org.grobid.core.data.BiblioItem
 
setA_Year(String) - Method in class org.grobid.core.data.BiblioItem
 
setAbstract(String) - Method in class org.grobid.core.data.BiblioItem
 
setAbstractHeader(String) - Method in class org.grobid.core.data.BiblioItem
 
setAcknowledgementBlocks(List<Integer>) - Method in class org.grobid.core.document.Document
 
setAcronym(String) - Method in class org.grobid.core.data.Affiliation
 
setAddress(String) - Method in class org.grobid.core.data.BiblioItem
 
setAddressString(String) - Method in class org.grobid.core.data.Affiliation
 
setAddrLine(String) - Method in class org.grobid.core.data.Affiliation
 
setAffiliation(String) - Method in class org.grobid.core.data.BiblioItem
 
setAffiliations(List<Affiliation>) - Method in class org.grobid.core.data.Person
 
setAffiliationString(String) - Method in class org.grobid.core.data.Affiliation
 
setAnnotated(boolean) - Method in class org.grobid.core.annotations.Paragraph
 
setApplication(boolean) - Method in class org.grobid.core.data.PatentItem
 
setArticles(ArrayList<BibDataSet>) - Method in class org.grobid.core.sax.PatentAnnotationSaxParser
 
setArticleTitle(String) - Method in class org.grobid.core.data.BiblioItem
 
setAuthority(String) - Method in class org.grobid.core.data.PatentItem
 
setAuthors(String) - Method in class org.grobid.core.data.BiblioItem
 
setAuthorString(String) - Method in class org.grobid.core.data.BiblioItem
 
setBeginBlockPAReport(int) - Method in class org.grobid.core.document.PatentDocument
 
setBeginPage(int) - Method in class org.grobid.core.data.BiblioItem
 
setBibDataSets(List<BibDataSet>) - Method in class org.grobid.core.document.Document
 
setBlockDocumentHeaders(List<Integer>) - Method in class org.grobid.core.document.Document
 
setBlockFigures(List<Integer>) - Method in class org.grobid.core.document.Document
 
setBlockFooters(List<Integer>) - Method in class org.grobid.core.document.Document
 
setBlockHeaders(List<Integer>) - Method in class org.grobid.core.document.Document
 
setBlockHeadFigures(List<Integer>) - Method in class org.grobid.core.document.Document
 
setBlockHeadTables(List<Integer>) - Method in class org.grobid.core.document.Document
 
setBlockNumber(int) - Method in class org.grobid.core.document.NonTextObject
 
setBlockReferences(SortedSet<DocumentPiece>) - Method in class org.grobid.core.document.Document
 
setBlockSectionTitles(List<Integer>) - Method in class org.grobid.core.document.Document
 
setBlockTables(List<Integer>) - Method in class org.grobid.core.document.Document
 
setBold(boolean) - Method in class org.grobid.core.layout.Block
 
setBold(boolean) - Method in class org.grobid.core.layout.Cluster
 
setBold(boolean) - Method in class org.grobid.core.layout.LayoutToken
 
setBookTitle(String) - Method in class org.grobid.core.data.BiblioItem
 
setBookType(String) - Method in class org.grobid.core.data.BiblioItem
 
setCategories(List<String>) - Method in class org.grobid.core.data.BiblioItem
 
setCategory(String) - Method in class org.grobid.core.data.PriorArtCitation
 
setClasses(List<String>) - Method in class org.grobid.core.data.Classification
 
setClassificationScheme(String) - Method in class org.grobid.core.data.Classification
 
setClusters(List<Cluster>) - Method in class org.grobid.core.document.Document
 
setCntManager(CntManager) - Static method in class org.grobid.core.engines.Engine
 
setColorFont(String) - Method in class org.grobid.core.layout.Block
 
setColorFont(String) - Method in class org.grobid.core.layout.LayoutToken
 
setComment(String) - Method in class org.grobid.core.data.PriorArtCitation
 
setConf(double) - Method in class org.grobid.core.data.BiblioItem
 
setConf(double) - Method in class org.grobid.core.data.PatentItem
 
setConfidence(double) - Method in class org.grobid.core.data.BibDataSet
 
setConfidence(String) - Method in class org.grobid.core.data.BiblioItem
 
setContext(String) - Method in class org.grobid.core.data.PatentItem
 
setContext(Context) - Static method in class org.grobid.core.utilities.GrobidProperties
Set the context.
setContextExecutionServer(Boolean) - Static method in class org.grobid.core.utilities.GrobidProperties
Set if the execution context is stand alone or server.
setCopyright(String) - Method in class org.grobid.core.data.BiblioItem
 
setCorresp(boolean) - Method in class org.grobid.core.data.Person
 
setCountry(String) - Method in class org.grobid.core.data.Affiliation
 
setCountry(String) - Method in class org.grobid.core.data.BiblioItem
 
setCrossrefHost(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the id for a connection to crossref, given in the grobid-property file.
setCrossrefId(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the id for a connection to crossref, given in the grobid-property file.
setCrossrefPort(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the port for a connection to crossref, given in the grobid-property file.
setCrossrefPw(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the id for a connection to crossref, given in the grobid-property file.
setDay(String) - Method in class org.grobid.core.data.BiblioItem
 
setDay(int) - Method in class org.grobid.core.data.Date
 
setDayString(String) - Method in class org.grobid.core.data.Date
 
setDedication(String) - Method in class org.grobid.core.data.BiblioItem
 
setDegree(String) - Method in class org.grobid.core.data.BiblioItem
 
setDepartments(List<String>) - Method in class org.grobid.core.data.Affiliation
 
setDescription(String) - Method in class org.grobid.core.document.NonTextObject
 
setDesign(boolean) - Method in class org.grobid.core.data.PatentItem
 
setDocumentPath(String) - Method in class org.grobid.core.engines.patent.ReferenceExtractor
 
setDOI(String) - Method in class org.grobid.core.data.BiblioItem
 
setE_Day(String) - Method in class org.grobid.core.data.BiblioItem
 
setE_Month(String) - Method in class org.grobid.core.data.BiblioItem
 
setE_Year(String) - Method in class org.grobid.core.data.BiblioItem
 
setEdition(String) - Method in class org.grobid.core.data.BiblioItem
 
setEditors(String) - Method in class org.grobid.core.data.BiblioItem
 
setEmail(String) - Method in class org.grobid.core.data.BiblioItem
 
setEmail(String) - Method in class org.grobid.core.data.Person
 
setEndPage(int) - Method in class org.grobid.core.data.BiblioItem
 
setEndPosition(int) - Method in class org.grobid.core.document.NonTextObject
 
setEndToken(int) - Method in class org.grobid.core.layout.Block
 
setEnglishTitle(String) - Method in class org.grobid.core.data.BiblioItem
 
setError(boolean) - Method in class org.grobid.core.data.BiblioItem
 
setEvent(String) - Method in class org.grobid.core.data.BiblioItem
 
setFailAffiliation(boolean) - Method in class org.grobid.core.data.Affiliation
 
setFile(String) - Method in class org.grobid.core.document.NonTextObject
 
setFileName(String) - Method in class org.grobid.core.sax.MarecSaxParser
 
setFilter(String) - Method in class org.grobid.core.sax.TextSaxParser
 
setFirstName(String) - Method in class org.grobid.core.data.Person
 
setFont(String) - Method in class org.grobid.core.layout.Block
 
setFont(String) - Method in class org.grobid.core.layout.Cluster
 
setFont(String) - Method in class org.grobid.core.layout.LayoutToken
 
setFontSize(double) - Method in class org.grobid.core.layout.Block
 
setFontSize(double) - Method in class org.grobid.core.layout.Cluster
 
setFontSize(double) - Method in class org.grobid.core.layout.LayoutToken
 
setFullAffiliations(List<Affiliation>) - Method in class org.grobid.core.data.BiblioItem
 
setFullAuthors(List<Person>) - Method in class org.grobid.core.data.BiblioItem
 
setFullEditors(List<Person>) - Method in class org.grobid.core.data.BiblioItem
 
setGornIdx(String) - Method in class org.grobid.core.annotations.Paragraph
 
setGrant(String) - Method in class org.grobid.core.data.BiblioItem
 
setGrobidPropertiesPath(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Set the GROBID_HOME path.
setHeader(String) - Method in class org.grobid.core.document.NonTextObject
 
setHeight(double) - Method in class org.grobid.core.layout.Block
 
setHeight(double) - Method in class org.grobid.core.layout.LayoutToken
 
setId(String) - Method in class org.grobid.core.annotations.Paragraph
 
setInchi(String) - Method in class org.grobid.core.data.ChemicalEntity
 
setInDOI(String) - Method in class org.grobid.core.data.BiblioItem
 
setInitialContext() - Static method in class org.grobid.core.mock.MockContext
Set initial context with the given arguments.
setInitialContext(String) - Static method in class org.grobid.core.mock.MockContext
Set initial context with the given arguments.
setInitialContext(String, String) - Static method in class org.grobid.core.mock.MockContext
Set initial context with the given arguments.
setInitialContext(String, String, String) - Static method in class org.grobid.core.mock.MockContext
Set initial context with the given arguments.
setInput(String) - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
setInstitution(String) - Method in class org.grobid.core.data.BiblioItem
 
setInstitutions(List<String>) - Method in class org.grobid.core.data.Affiliation
 
setISBN10(String) - Method in class org.grobid.core.data.BiblioItem
 
setISBN13(String) - Method in class org.grobid.core.data.BiblioItem
 
setISSN(String) - Method in class org.grobid.core.data.BiblioItem
 
setISSNe(String) - Method in class org.grobid.core.data.BiblioItem
 
setIssue(String) - Method in class org.grobid.core.data.BiblioItem
 
setItalic(boolean) - Method in class org.grobid.core.layout.Block
 
setItalic(boolean) - Method in class org.grobid.core.layout.Cluster
 
setItalic(boolean) - Method in class org.grobid.core.layout.LayoutToken
 
setItem(int) - Method in class org.grobid.core.data.BiblioItem
 
setJournal(String) - Method in class org.grobid.core.data.BiblioItem
 
setJournalAbbrev(String) - Method in class org.grobid.core.data.BiblioItem
 
setKeyword(String) - Method in class org.grobid.core.data.BiblioItem
 
setKeyword(String) - Method in class org.grobid.core.data.Keyword
 
setKeywords(List<Keyword>) - Method in class org.grobid.core.data.BiblioItem
 
setKindCode(String) - Method in class org.grobid.core.data.PatentItem
 
setLabeledBlocks(SortedSetMultimap<String, DocumentPiece>) - Method in class org.grobid.core.document.Document
 
setLaboratories(List<String>) - Method in class org.grobid.core.data.Affiliation
 
setLanguage(String) - Method in class org.grobid.core.data.BiblioItem
 
setLanguage(String) - Method in class org.grobid.core.document.Document
 
setLargeImageURL(String) - Method in class org.grobid.core.data.BiblioItem
 
setLastName(String) - Method in class org.grobid.core.data.Person
 
setLayoutTokens(List<LayoutToken>) - Method in class org.grobid.core.layout.LayoutTokenization
 
setLocation(String) - Method in class org.grobid.core.data.BiblioItem
 
setLocationPublisher(String) - Method in class org.grobid.core.data.BiblioItem
 
setMarker(String) - Method in class org.grobid.core.data.Affiliation
 
setMiddleName(String) - Method in class org.grobid.core.data.Person
 
setMonth(String) - Method in class org.grobid.core.data.BiblioItem
 
setMonth(int) - Method in class org.grobid.core.data.Date
 
setMonthString(String) - Method in class org.grobid.core.data.Date
 
setMySQLDBName(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the database name for a connection to mysql, given in the grobid-property file.
setMySQLHost(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the id for a connection to mysql, given in the grobid-property file.
setMySQLPort(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the port for a connection to mysql, given in the grobid-property file.
setMySQLPw(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the id for a connection to mysql, given in the grobid-property file.
setMySQLUsername(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the username for a connection to mysql, given in the grobid-property file.
setN(int) - Method in class org.grobid.core.sax.MarecSaxParser
 
setName(String) - Method in class org.grobid.core.data.Affiliation
 
setNativeLibraryPath(String) - Static method in class org.grobid.core.utilities.GrobidProperties
 
setNbPages(int) - Method in class org.grobid.core.data.BiblioItem
 
setNBThreads(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the number of threads, given in the grobid-property file.
setNbTokens(int) - Method in class org.grobid.core.layout.Block
 
setNbTokens(int) - Method in class org.grobid.core.layout.Cluster
 
setNormalizedPublicationDate(Date) - Method in class org.grobid.core.data.BiblioItem
 
setNormalizedSubmissionDate(Date) - Method in class org.grobid.core.data.BiblioItem
 
setNote(String) - Method in class org.grobid.core.data.BiblioItem
 
setNPL(BiblioItem) - Method in class org.grobid.core.data.PriorArtCitation
 
setNumber(String) - Method in class org.grobid.core.data.BiblioItem
 
setNumberEpoDoc(String) - Method in class org.grobid.core.data.PatentItem
 
setNumberWysiwyg(String) - Method in class org.grobid.core.data.PatentItem
 
setOffsetBegin(int) - Method in class org.grobid.core.data.PatentItem
 
setOffsetEnd(int) - Method in class org.grobid.core.data.ChemicalEntity
 
setOffsetEnd(int) - Method in class org.grobid.core.data.PatentItem
 
setOffsetRaw(int) - Method in class org.grobid.core.data.PatentItem
 
setOffsetStart(int) - Method in class org.grobid.core.data.ChemicalEntity
 
setOriginalAbstract(String) - Method in class org.grobid.core.data.BiblioItem
 
setOriginalAddress(String) - Method in class org.grobid.core.data.BiblioItem
 
setOriginalAffiliation(String) - Method in class org.grobid.core.data.BiblioItem
 
setOriginalAuthors(String) - Method in class org.grobid.core.data.BiblioItem
 
setOriginalJournal(String) - Method in class org.grobid.core.data.BiblioItem
 
setOriginalKeyword(String) - Method in class org.grobid.core.data.BiblioItem
 
setOriginalNote(String) - Method in class org.grobid.core.data.BiblioItem
 
setOriginalTitle(String) - Method in class org.grobid.core.data.BiblioItem
 
setOriginalVolumeBlock(String) - Method in class org.grobid.core.data.BiblioItem
 
setPage(int) - Method in class org.grobid.core.document.NonTextObject
 
setPage(int) - Method in class org.grobid.core.layout.Block
 
setPage(int) - Method in class org.grobid.core.layout.LayoutToken
 
setPageRange(String) - Method in class org.grobid.core.data.BiblioItem
 
setParentItem(BiblioItem) - Method in class org.grobid.core.data.BiblioItem
 
setPassages(List<Passage>) - Method in class org.grobid.core.data.PriorArtCitation
 
setPatent(PatentItem) - Method in class org.grobid.core.data.PriorArtCitation
 
setPatents(ArrayList<PatentItem>) - Method in class org.grobid.core.sax.PatentAnnotationSaxParser
 
setPath(String) - Method in class org.grobid.core.data.BiblioItem
 
setPath2grobidHome(String) - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
setPath2grobidProperty(String) - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
setPath2Input(String) - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
setPath2Output(String) - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
setPdf(boolean) - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
setPdf2XmlTimeout(int) - Method in class org.grobid.core.document.DocumentSource
 
setPdfFile(File) - Method in class org.grobid.core.document.DocumentSource
 
setPhone(String) - Method in class org.grobid.core.data.BiblioItem
 
setPlant(boolean) - Method in class org.grobid.core.data.PatentItem
 
setPositionEnd(int) - Method in class org.grobid.core.annotations.Paragraph
 
setPositionStart(int) - Method in class org.grobid.core.annotations.Paragraph
 
setPostBox(String) - Method in class org.grobid.core.data.Affiliation
 
setPostCode(String) - Method in class org.grobid.core.data.Affiliation
 
setProcessMethodName(String) - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
setPropertyValue(String, String) - Static method in class org.grobid.core.utilities.GrobidProperties
Return the value corresponding to the property key.
setProps(Properties) - Static method in class org.grobid.core.utilities.GrobidProperties
 
setProvisional(boolean) - Method in class org.grobid.core.data.PatentItem
 
setProxyHost(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the host a proxy connection, given in the grobid-property file.
setProxyPort(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the port for a proxy connection, given in the grobid-property file.
setPublicationDate(String) - Method in class org.grobid.core.data.BiblioItem
 
setPublisher(String) - Method in class org.grobid.core.data.BiblioItem
 
setPublisherPlace(String) - Method in class org.grobid.core.data.BiblioItem
 
setPublisherWebsite(String) - Method in class org.grobid.core.data.BiblioItem
 
setPubnum(String) - Method in class org.grobid.core.data.BiblioItem
 
setRawBib(String) - Method in class org.grobid.core.data.BibDataSet
 
setRawCitation(String) - Method in class org.grobid.core.data.PriorArtCitation
 
setRawClaims(String) - Method in class org.grobid.core.data.PriorArtCitation
 
setRawDate(String) - Method in class org.grobid.core.data.Date
 
setRawName(String) - Method in class org.grobid.core.data.ChemicalEntity
 
setRawPassage(String) - Method in class org.grobid.core.data.Passage
 
setRawRefText(String) - Method in class org.grobid.core.engines.patent.PatentRefParser
 
setRawRefTextOffset(int) - Method in class org.grobid.core.engines.patent.PatentRefParser
 
setRawString(String) - Method in class org.grobid.core.data.Classification
 
setRecursive(boolean) - Method in class org.grobid.core.main.batch.GrobidMainArgs
 
setReference(String) - Method in class org.grobid.core.data.BiblioItem
 
setRefSymbol(String) - Method in class org.grobid.core.data.BibDataSet
 
setRegion(String) - Method in class org.grobid.core.data.Affiliation
 
setReissued(boolean) - Method in class org.grobid.core.data.PatentItem
 
setResBib(BiblioItem) - Method in class org.grobid.core.data.BibDataSet
 
setResourcesInHome(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets if resources like firstnames, lastnames and countries are supposed to be read from grobid-home folder, given in the grobid-property file.
setReview(String) - Method in class org.grobid.core.data.BiblioItem
 
setRotation(boolean) - Method in class org.grobid.core.layout.LayoutToken
 
setS_Day(String) - Method in class org.grobid.core.data.BiblioItem
 
setS_Month(String) - Method in class org.grobid.core.data.BiblioItem
 
setS_Year(String) - Method in class org.grobid.core.data.BiblioItem
 
setSerie(String) - Method in class org.grobid.core.data.BiblioItem
 
setSerieTitle(String) - Method in class org.grobid.core.data.BiblioItem
 
setSettlement(String) - Method in class org.grobid.core.data.Affiliation
 
setSmallImageURL(String) - Method in class org.grobid.core.data.BiblioItem
 
setSmiles(String) - Method in class org.grobid.core.data.ChemicalEntity
 
setStartPosition(int) - Method in class org.grobid.core.document.NonTextObject
 
setStartTag(StartElement) - Method in class org.grobid.core.annotations.Paragraph
 
setStartToken(int) - Method in class org.grobid.core.layout.Block
 
setSubjects(List<String>) - Method in class org.grobid.core.data.BiblioItem
 
setSubmission(String) - Method in class org.grobid.core.data.BiblioItem
 
setSubmissionDate(String) - Method in class org.grobid.core.data.BiblioItem
 
setSubtitle(String) - Method in class org.grobid.core.data.BiblioItem
 
setSuffix(String) - Method in class org.grobid.core.data.Person
 
setSupportType(String) - Method in class org.grobid.core.data.BiblioItem
 
setTei(String) - Method in class org.grobid.core.document.Document
 
setText(String) - Method in class org.grobid.core.layout.Block
 
setText(String) - Method in class org.grobid.core.layout.LayoutToken
 
setTitle(String) - Method in class org.grobid.core.data.BiblioItem
 
setTitle(String) - Method in class org.grobid.core.data.Person
 
setTitleMatchNum(boolean) - Method in class org.grobid.core.document.Document
 
setTokenization(List<String>) - Method in class org.grobid.core.layout.LayoutTokenization
 
setTop(DocumentNode) - Method in class org.grobid.core.document.Document
 
setTown(String) - Method in class org.grobid.core.data.BiblioItem
 
setType(String) - Method in class org.grobid.core.data.BiblioItem
 
setType(String) - Method in class org.grobid.core.data.Keyword
 
setType(String) - Method in class org.grobid.core.data.PatentItem
 
setType(int) - Method in class org.grobid.core.document.NonTextObject
 
setType(Block.Type) - Method in class org.grobid.core.layout.Block
 
setTypeDescription(String) - Method in class org.grobid.core.data.BiblioItem
 
setURI(String) - Method in class org.grobid.core.data.BiblioItem
 
setURL(String) - Method in class org.grobid.core.data.Affiliation
 
setURL(String) - Method in class org.grobid.core.data.BiblioItem
 
setUseLanguageId(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets if a language id shall be used, given in the grobid-property file.
setUtility(boolean) - Method in class org.grobid.core.data.PatentItem
 
setVersion(String) - Method in class org.grobid.core.data.BiblioItem
 
setVersion(String) - Static method in class org.grobid.core.utilities.GrobidProperties
Sets the GROBID version.
setVolume(String) - Method in class org.grobid.core.data.BiblioItem
 
setVolumeBlock(String, boolean) - Method in class org.grobid.core.data.BiblioItem
 
setWeb(String) - Method in class org.grobid.core.data.BiblioItem
 
setWidth(double) - Method in class org.grobid.core.layout.Block
 
setWidth(double) - Method in class org.grobid.core.layout.LayoutToken
 
setWriter(Writer) - Method in class org.grobid.core.sax.PatentAnnotationSaxParser
 
setX(double) - Method in class org.grobid.core.layout.Block
 
setX(double) - Method in class org.grobid.core.layout.LayoutToken
 
setX1(double) - Method in class org.grobid.core.document.NonTextObject
 
setX2(double) - Method in class org.grobid.core.document.NonTextObject
 
setXmlFile(File) - Method in class org.grobid.core.document.DocumentSource
 
setY(double) - Method in class org.grobid.core.layout.Block
 
setY(double) - Method in class org.grobid.core.layout.LayoutToken
 
setY1(double) - Method in class org.grobid.core.document.NonTextObject
 
setY2(double) - Method in class org.grobid.core.document.NonTextObject
 
setYear(String) - Method in class org.grobid.core.data.BiblioItem
 
setYear(int) - Method in class org.grobid.core.data.Date
 
setYearString(String) - Method in class org.grobid.core.data.Date
 
SHA1 - Class in org.grobid.core.utilities
Hash a string using sha1.
SHA1() - Constructor for class org.grobid.core.utilities.SHA1
 
shadowNumbers(String) - Static method in class org.grobid.core.utilities.TextUtilities
Replace numbers in the string by a dummy character for string distance evaluations
SHARP - Static variable in class org.grobid.core.utilities.TextUtilities
 
singleChar - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
singleChar - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
singleChar - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
singleChar - Variable in class org.grobid.core.features.FeaturesVectorDate
 
singleChar - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
singleChar - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
singleChar - Variable in class org.grobid.core.features.FeaturesVectorName
 
singleChar - Variable in class org.grobid.core.features.FeaturesVectorReference
 
singleChar - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
singleChar - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
SLASH - Static variable in class org.grobid.core.utilities.TextUtilities
 
SPACE - Static variable in class org.grobid.core.utilities.TextUtilities
 
SPACE - Static variable in class org.grobid.core.utilities.XmlUtils
 
splitAndClean(List<String>) - Method in class org.grobid.core.data.util.EmailSanitizer
 
START - Static variable in class org.grobid.core.utilities.counters.GrobidTimer
The tag under which the start time is saved.
start() - Method in class org.grobid.core.utilities.counters.GrobidTimer
Start the timer.
start - Variable in class org.grobid.core.utilities.OffsetPosition
 
START_BRACKET - Static variable in class org.grobid.core.utilities.TextUtilities
 
START_DOCUMENT_POINTER - Static variable in class org.grobid.core.document.DocumentPointer
 
START_ENTITY_LABEL_PREFIX - Static variable in class org.grobid.core.engines.tagging.GenericTaggerUtils
 
startElement(String, String, String, Attributes) - Method in class org.grobid.core.sax.CountryCodeSaxParser
 
startElement(String, String, String, Attributes) - Method in class org.grobid.core.sax.CrossrefSaxParser
 
startElement(String, String, String, Attributes) - Method in class org.grobid.core.sax.CrossrefUnixrefSaxParser
 
startElement(String, String, String, Attributes) - Method in class org.grobid.core.sax.MarecSaxParser
 
startElement(String, String, String, Attributes) - Method in class org.grobid.core.sax.PatentAnnotationSaxParser
 
startElement(String, String, String, Attributes) - Method in class org.grobid.core.sax.PDF2XMLSaxParser
 
startElement(String, String, String, Attributes) - Method in class org.grobid.core.sax.TextSaxParser
 
startEndTag(String) - Static method in class org.grobid.core.utilities.XmlUtils
Build a tag .
startTag - Variable in class org.grobid.core.annotations.Paragraph
The StartElement.
startTag(String) - Static method in class org.grobid.core.utilities.XmlUtils
Build a start tag.
startTag(String, Attributes) - Static method in class org.grobid.core.utilities.XmlUtils
Build a start tag.
startToken - Variable in class org.grobid.core.document.DocumentNode
 
STOP - Static variable in class org.grobid.core.utilities.counters.GrobidTimer
The tag end.
stop(String) - Method in class org.grobid.core.utilities.counters.GrobidTimer
Store the current time with the name pTag.
stopwords - Static variable in class org.grobid.core.utilities.TextUtilities
 
str2chararray(String) - Static method in class org.grobid.core.utilities.LevenshteinDistanceAligment
 
StreamGobbler - Class in org.grobid.core.process
Copyright (c) 2006-2011 Christian Plattner.
StreamGobbler(InputStream) - Constructor for class org.grobid.core.process.StreamGobbler
 
StreamProcess - Class in org.grobid.core.process
 
StreamProcess(InputStream) - Constructor for class org.grobid.core.process.StreamProcess
 
string - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
string - Variable in class org.grobid.core.features.FeaturesVectorChemicalEntity
 
string - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
string - Variable in class org.grobid.core.features.FeaturesVectorDate
 
string - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
string - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
string - Variable in class org.grobid.core.features.FeaturesVectorName
 
string - Variable in class org.grobid.core.features.FeaturesVectorReference
 
string - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
string - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
stringToBoolean(String) - Static method in class org.grobid.core.utilities.Utilities
Convert a string to boolean.
stripNonValidXMLCharacters(String) - Method in class org.grobid.core.document.OPSService
 

T

table - Static variable in class org.grobid.core.document.BasicStructureBuilder
 
Table - Static variable in class org.grobid.core.document.NonTextObject
 
TAG_APP_INFO - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_APPLICATION - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_AUTHOR - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_CERTAINTY - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_DATE - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_DIV - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_END_LOW_SLASH - Static variable in class org.grobid.core.utilities.XmlUtils
 
TAG_END_SUP - Static variable in class org.grobid.core.utilities.XmlUtils
 
TAG_FILE_DESC - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_IDNO - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_ITEM - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_LABEL - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_LIST - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_NOTE - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_NOTES_STMT - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_P - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_PTR - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_START_LOW - Static variable in class org.grobid.core.utilities.XmlUtils
 
TAG_START_SLASH_SUP - Static variable in class org.grobid.core.utilities.XmlUtils
 
TAG_START_SUP - Static variable in class org.grobid.core.utilities.XmlUtils
 
TAG_TEI - Static variable in interface org.grobid.core.utilities.TeiValues
 
TAG_TEI_HEADER - Static variable in interface org.grobid.core.utilities.TeiValues
 
TaggerFactory - Class in org.grobid.core.engines.tagging
User: zholudev Date: 3/20/14
TaggerFactory() - Constructor for class org.grobid.core.engines.tagging.TaggerFactory
 
TechReport - Static variable in class org.grobid.core.data.BiblioItem
 
teiBuffer - Variable in class org.grobid.core.annotations.TeiStAXParser
Temporary buffer used to append data inside TEI tag.
TEIFormater - Class in org.grobid.core.document
Class for generating a TEI representation of a document.
TEIFormater(Document) - Constructor for class org.grobid.core.document.TEIFormater
 
TEIFormater.SchemaDeclaration - Enum in org.grobid.core.document
 
TeiStAXParsedInfo - Class in org.grobid.core.annotations
Class containing all the informations about the parsed publication of TEI document.
TeiStAXParsedInfo(boolean) - Constructor for class org.grobid.core.annotations.TeiStAXParsedInfo
Constructor.
TeiStAXParser - Class in org.grobid.core.annotations
StAX parser which parses an input tei, and inserts the Citations of patents and NPL of description (<div type="description">...</div>) if found in that document.
TeiStAXParser(InputStream, OutputStream, boolean) - Constructor for class org.grobid.core.annotations.TeiStAXParser
Constructor.
TeiStAXParser(InputStream, OutputStream, boolean, boolean) - Constructor for class org.grobid.core.annotations.TeiStAXParser
Constructor.
TeiStAXParser(InputStream, OutputStream, boolean, ReferenceExtractor, boolean) - Constructor for class org.grobid.core.annotations.TeiStAXParser
Constructor.
TeiValues - Interface in org.grobid.core.utilities
 
test_all_capital(String) - Method in class org.grobid.core.features.FeatureFactory
Test if all the letters of the string are capital letters (characters can be also digits which are then ignored)
test_char(String, char) - Method in class org.grobid.core.features.FeatureFactory
Test for a given character occurence in the string
test_city(String) - Method in class org.grobid.core.features.FeatureFactory
Test if the current string refers to a known city
test_common(String) - Method in class org.grobid.core.features.FeatureFactory
Test if the current string is a common name
test_complex_number(String) - Method in class org.grobid.core.features.FeatureFactory
Test for the current string is a number or a decimal number, i.e.
test_country(String) - Method in class org.grobid.core.features.FeatureFactory
Test if the current string refers to a country
test_country_codes(String) - Method in class org.grobid.core.features.FeatureFactory
Test if the current string refers to country code
test_digit(String) - Method in class org.grobid.core.features.FeatureFactory
Test for the current string contains at least one digit
test_digit(String) - Static method in class org.grobid.core.utilities.TextUtilities
Test for the current string contains at least one digit.
test_first_capital(String) - Method in class org.grobid.core.features.FeatureFactory
Test if the first letter of the string is a capital letter
test_first_names(String) - Method in class org.grobid.core.features.FeatureFactory
Test if the current string is a family name
test_kind_codes(String) - Method in class org.grobid.core.features.FeatureFactory
Test if the current string refers to a kind code
test_last_names(String) - Method in class org.grobid.core.features.FeatureFactory
Test if the current string is a family name
test_month(String) - Method in class org.grobid.core.features.FeatureFactory
Test if the current string refers to a month
test_names(String) - Method in class org.grobid.core.features.FeatureFactory
Test if the current string is a first name or family name
test_number(String) - Method in class org.grobid.core.features.FeatureFactory
Test for the current string contains only digit
TEST_RESOURCES_PATH - Static variable in class org.grobid.core.main.GrobidConstants
 
TextSaxParser - Class in org.grobid.core.sax
Stupid SAX parser which accumulate the textual content.
TextSaxParser() - Constructor for class org.grobid.core.sax.TextSaxParser
 
TextUtilities - Class in org.grobid.core.utilities
Class for holding static methods for text processing.
TextUtilities() - Constructor for class org.grobid.core.utilities.TextUtilities
 
throwRuntimeFormatException(Exception) - Static method in class org.grobid.core.utilities.XMLWriter
Throws RuntimeException with the content of the exception in parameter.
toBibTeX() - Method in class org.grobid.core.data.BiblioItem
Export to BibTeX format
toBibTeX(String) - Method in class org.grobid.core.data.BiblioItem
Export to BibTeX format
toCOinS() - Method in class org.grobid.core.data.BiblioItem
Export the bibliographical item into a COinS (OpenURL ContextObject in SPAN).
toFullOpenURL(String, String) - Method in class org.grobid.core.data.BiblioItem
Export the bibliographical item into an OpenURL with given link resolver address.
token - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
token - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
token - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
token - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
tokenize(String) - Method in class org.grobid.core.analyzers.GrobidAnalyzer
Tokenizer entry point
tokenize(Language, String) - Method in class org.grobid.core.analyzers.GrobidAnalyzer
 
tokenize(String) - Static method in class org.grobid.core.analyzers.GrobidDefaultAnalyzer
 
tokens - Variable in class org.grobid.core.layout.Block
 
toOpenURL(String) - Method in class org.grobid.core.data.BiblioItem
Export the bibliographical item into OpenURL 1.0.
toRawString() - Method in class org.grobid.core.annotations.Description
Return the value of rawDescription.
toString() - Method in class org.grobid.core.data.Affiliation
 
toString() - Method in class org.grobid.core.data.BibDataSet
 
toString() - Method in class org.grobid.core.data.BiblioItem
 
toString() - Method in class org.grobid.core.data.ChemicalEntity
 
toString() - Method in class org.grobid.core.data.Date
 
toString() - Method in class org.grobid.core.data.Keyword
 
toString() - Method in class org.grobid.core.data.PatentItem
 
toString() - Method in class org.grobid.core.data.Person
 
toString() - Method in class org.grobid.core.document.DocumentNode
 
toString(int) - Method in class org.grobid.core.document.DocumentNode
 
toString() - Method in class org.grobid.core.document.DocumentPiece
 
toString() - Method in class org.grobid.core.document.DocumentPointer
 
toString() - Method in class org.grobid.core.document.NonTextObject
 
toString() - Method in class org.grobid.core.engines.citations.LabeledReferenceResult
 
toString() - Method in enum org.grobid.core.GrobidModels
 
toString() - Method in class org.grobid.core.lang.Language
 
toString() - Method in class org.grobid.core.layout.Block
 
toString() - Method in class org.grobid.core.layout.BoundingBox
 
toString() - Method in class org.grobid.core.layout.LayoutToken
 
toString() - Method in class org.grobid.core.utilities.OffsetPosition
 
toString() - Method in class org.grobid.core.utilities.Pair
 
toString() - Method in class org.grobid.core.utilities.XMLWriter
toStringIndented() - Method in class org.grobid.core.utilities.XMLWriter
Return the xml built formatted.
toTei() - Method in class org.grobid.core.annotations.Description
 
toTEI() - Method in class org.grobid.core.data.Affiliation
 
toTEI() - Method in class org.grobid.core.data.BibDataSet
 
toTEI(int) - Method in class org.grobid.core.data.BibDataSet
 
toTEI(int) - Method in class org.grobid.core.data.BiblioItem
Export the bibliographical item into a TEI BiblStruct string
toTEI(int, boolean) - Method in class org.grobid.core.data.BiblioItem
 
toTEI(int, int, boolean) - Method in class org.grobid.core.data.BiblioItem
Export the bibliographical item into a TEI BiblStruct string
toTEI() - Method in class org.grobid.core.data.BiblioSet
Export the bibliographical lists into TEI structures
toTEI() - Method in class org.grobid.core.data.Date
 
toTEI() - Method in class org.grobid.core.data.Keyword
 
toTEI() - Method in class org.grobid.core.data.PatentItem
 
toTEI(boolean, String) - Method in class org.grobid.core.data.PatentItem
 
toTEI(String) - Method in class org.grobid.core.data.PatentItem
 
toTEI(String, boolean, String) - Method in class org.grobid.core.data.PatentItem
 
toTEI() - Method in class org.grobid.core.data.Person
 
toTEI2(BiblioSet) - Method in class org.grobid.core.data.BiblioItem
Export the bibliographical item into a TEI BiblStruct string with pointers and list sharing
toTEIAcknowledgementLight(StringBuilder, String, List<String>, List<BibDataSet>, boolean, boolean) - Method in class org.grobid.core.document.TEIFormater
 
toTEIAnnexLight(StringBuilder, String, BiblioItem, List<BibDataSet>, List<String>, Document, boolean, boolean, boolean) - Method in class org.grobid.core.document.TEIFormater
 
toTEIAnnexML(StringBuilder, String, BiblioItem, List<BibDataSet>, List<String>, Document) - Method in class org.grobid.core.document.TEIFormater
 
toTEIAuthorBlock(int) - Method in class org.grobid.core.data.BiblioItem
Create the TEI encoding for the author+affiliation block for the current biblio object.
toTEIBodyLight(StringBuilder, String, BiblioItem, List<BibDataSet>, LayoutTokenization, Document, boolean, boolean, boolean) - Method in class org.grobid.core.document.TEIFormater
Light TEI formatting of the body where only basic logical document structures are present.
toTEIBodyML(StringBuilder, String, BiblioItem, List<BibDataSet>, List<String>, Document) - Method in class org.grobid.core.document.TEIFormater
TEI formatting of the body where we try to realize the full logical document structure.
toTEIFootNoteLight(StringBuilder, Document, boolean, boolean) - Method in class org.grobid.core.document.TEIFormater
 
toTEIHeader(BiblioItem, boolean, String, boolean) - Method in class org.grobid.core.document.TEIFormater
 
toTEIHeader(BiblioItem, boolean, TEIFormater.SchemaDeclaration, String, boolean) - Method in class org.grobid.core.document.TEIFormater
 
toTeiIndented() - Method in class org.grobid.core.annotations.Description
 
toTeiNotIndented() - Method in class org.grobid.core.annotations.Description
 
toTEIReferences(StringBuilder, List<BibDataSet>, boolean) - Method in class org.grobid.core.document.TEIFormater
 
toXML() - Method in class org.grobid.core.data.Date
 
train(File, File, File) - Static method in class org.grobid.core.jni.WapitiModel
 
train(File, File, File, String) - Static method in class org.grobid.core.jni.WapitiModel
 
trainingExtraction(String, List<String>) - Method in class org.grobid.core.engines.AffiliationAddressParser
Extract results from a labelled header in the training format without any string modification.
trainingExtraction(List<String>, boolean) - Method in class org.grobid.core.engines.AuthorParser
Extract results from a list of name strings in the training format without any string modification.
trainingExtraction(List<String>) - Method in class org.grobid.core.engines.CitationParser
Extract results from a list of citation strings in the training format without any string modification.
trainingExtraction(List<String>) - Method in class org.grobid.core.engines.DateParser
Extract results from a date string in the training format without any string modification.
trimEncodedCharaters(String) - Static method in class org.grobid.core.utilities.TextUtilities
Ensure that special XML characters are correctly encoded.

U

Unknown - Static variable in class org.grobid.core.data.BiblioItem
 
Unknown - Static variable in class org.grobid.core.document.NonTextObject
 
Unpublished - Static variable in class org.grobid.core.data.BiblioItem
 
updatePropertyFile(File, String, String) - Static method in class org.grobid.core.utilities.GrobidProperties
Update the input file with the key and value given as argument.
updatePropertyFile(String, String) - Static method in class org.grobid.core.utilities.GrobidProperties
Update grobid.properties with the key and value given as argument.
uploadFile(String, String, String) - Static method in class org.grobid.core.utilities.Utilities
 
Utilities - Class in org.grobid.core.utilities
Some utilities methods that I don't know where to put.
Utilities() - Constructor for class org.grobid.core.utilities.Utilities
 

V

VAL_AUTOMATIC_ANOTATION - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_CLAIMS - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_COUNTRY - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_DESCRIPTION - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_DOC_NUMBER - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_EXCHANGE_DOC - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_HIGH - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_LOW - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_MEDIUM - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_PUBLICATION - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_SOFTWARE_APPLICATION - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_STANDOFF_ANOTATION - Static variable in interface org.grobid.core.utilities.TeiValues
 
VAL_STRING_RANGE - Static variable in interface org.grobid.core.utilities.TeiValues
 
validateObject(Object) - Method in class org.grobid.core.factory.GrobidPoolingFactory
valueOf(String) - Static method in enum org.grobid.core.document.TEIFormater.SchemaDeclaration
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.grobid.core.engines.counters.CitationParserCounters
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.grobid.core.engines.SegmentationLabel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.grobid.core.engines.tagging.GrobidCRFEngine
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.grobid.core.exceptions.GrobidExceptionStatus
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.grobid.core.GrobidModels
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.grobid.core.layout.Block.Type
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.grobid.core.utilities.LevenshteinDistanceAligment.Op
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.grobid.core.document.TEIFormater.SchemaDeclaration
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.grobid.core.engines.counters.CitationParserCounters
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.grobid.core.engines.SegmentationLabel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.grobid.core.engines.tagging.GrobidCRFEngine
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.grobid.core.exceptions.GrobidExceptionStatus
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.grobid.core.GrobidModels
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.grobid.core.layout.Block.Type
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.grobid.core.utilities.LevenshteinDistanceAligment.Op
Returns an array containing the constants of this enum type, in the order they are declared.
VERS_1_0 - Static variable in interface org.grobid.core.utilities.TeiValues
 

W

W3C_NAMESPACE - Static variable in interface org.grobid.core.utilities.TeiValues
 
WAPITI_NATIVE_LIB_NAME - Static variable in class org.grobid.core.main.GrobidConstants
 
WapitiModel - Class in org.grobid.core.jni
User: zholudev Date: 3/17/14
WapitiModel(File) - Constructor for class org.grobid.core.jni.WapitiModel
 
WapitiModel(GrobidModels) - Constructor for class org.grobid.core.jni.WapitiModel
 
WapitiTagger - Class in org.grobid.core.engines.tagging
User: zholudev Date: 3/20/14
WapitiTagger(GrobidModels) - Constructor for class org.grobid.core.engines.tagging.WapitiTagger
 
WapitiWrapper - Class in org.grobid.core.jni
User: zholudev Date: 3/17/14
WapitiWrapper() - Constructor for class org.grobid.core.jni.WapitiWrapper
 
width - Variable in class org.grobid.core.layout.Block
 
width - Variable in class org.grobid.core.layout.Cluster
 
width - Variable in class org.grobid.core.layout.LayoutToken
 
wordShape - Variable in class org.grobid.core.features.FeaturesVectorAffiliationAddress
 
wordShape(String) - Static method in class org.grobid.core.utilities.TextUtilities
 
wordShapeTrimmed(String) - Static method in class org.grobid.core.utilities.TextUtilities
 
writeField(StringBuilder, String, String, String, String, String, boolean, int, boolean) - Static method in class org.grobid.core.engines.FullTextParser
TODO some documentation...
writeFieldBeginEnd(StringBuilder, String, String, String, String, String, boolean, int, boolean) - Static method in class org.grobid.core.engines.FullTextParser
This is for writing fields for fields where begin and end of field matter, like paragraph or item
writeInFile(String, String) - Static method in class org.grobid.core.utilities.Utilities
Creates a file and writes some content in it.
writeInTeiBufferCharacters(Characters) - Method in class org.grobid.core.annotations.TeiStAXParser
Append pChars to TeiStAXParser.teiBuffer.
writeInTeiBufferEnd(EndElement) - Method in class org.grobid.core.annotations.TeiStAXParser
Append pEnd to TeiStAXParser.teiBuffer.
writeInTeiBufferRaw(String) - Method in class org.grobid.core.annotations.TeiStAXParser
Append in TeiStAXParser.teiBuffer @pTei.
writeInTeiBufferStart(StartElement) - Method in class org.grobid.core.annotations.TeiStAXParser
Append pStart to TeiStAXParser.teiBuffer.
writer - Variable in class org.grobid.core.annotations.Annotation
The XMLWriter to generate XML.

X

x - Variable in class org.grobid.core.layout.Block
 
x - Variable in class org.grobid.core.layout.Cluster
 
x - Variable in class org.grobid.core.layout.LayoutToken
 
XML - Static variable in interface org.grobid.core.utilities.TeiValues
 
XMLFilterFileInputStream - Class in org.grobid.core.utilities
Custom FileInputStream skipping invalid xml version 1.0 characters.
XMLFilterFileInputStream(String) - Constructor for class org.grobid.core.utilities.XMLFilterFileInputStream
 
XMLFilterFileInputStream(File) - Constructor for class org.grobid.core.utilities.XMLFilterFileInputStream
 
XMLFilterFileInputStream(FileDescriptor) - Constructor for class org.grobid.core.utilities.XMLFilterFileInputStream
 
XmlUtils - Class in org.grobid.core.utilities
 
XmlUtils() - Constructor for class org.grobid.core.utilities.XmlUtils
 
XMLWriter - Class in org.grobid.core.utilities
Utility class to write some XML.
XMLWriter() - Constructor for class org.grobid.core.utilities.XMLWriter
The constructor.

Y

y - Variable in class org.grobid.core.layout.Block
 
y - Variable in class org.grobid.core.layout.Cluster
 
y - Variable in class org.grobid.core.layout.LayoutToken
 
YEAR - Variable in class org.grobid.core.features.FeatureFactory
 
year - Variable in class org.grobid.core.features.FeaturesVectorCitation
 
year - Variable in class org.grobid.core.features.FeaturesVectorDate
 
year - Variable in class org.grobid.core.features.FeaturesVectorFulltext
 
year - Variable in class org.grobid.core.features.FeaturesVectorHeader
 
year - Variable in class org.grobid.core.features.FeaturesVectorReference
 
year - Variable in class org.grobid.core.features.FeaturesVectorReferenceSegmenter
 
year - Variable in class org.grobid.core.features.FeaturesVectorSegmentation
 
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